MySQL5.7 数据字典表损坏

    在进行xtrabackup备份的时候，出现了mysql用户下的表损坏的情况，用show tables可以看到这些表，但查询报错。然后用源码包中的创建语句脚本重新创建表，还是报错。经查证，这是一个bug。

xtrabackup --defaults-file=/usr/local/mysql/my.cnf --backup --target-dir=/opt/mysql/mysqldata/backup

-bash-4.1$ xtrabackup_56 --defaults-file=/usr/local/mysql/my.cnf --backup --target-dir=/opt/mysql/mysqldata/backup
-bash: xtrabackup_56: command not found
-bash-4.1$ xtrabackup --defaults-file=/usr/local/mysql/my.cnf --backup --target-dir=/opt/mysql/mysqldata/backup

170519 00:09:41  version_check Connecting to MySQL server with DSN 'dbi:mysql:;mysql_read_default_group=xtrabackup;port=3306;mysql_socket=/opt/mysql/mysqldata/3306/mysql.sock' as 'mysql'  (using password: NO).
Failed to connect to MySQL server as DBD::mysql module is not installed at - line 1327.
170519 00:09:41 Connecting to MySQL server host: localhost, user: mysql, password: not set, port: 3306, socket: /opt/mysql/mysqldata/3306/mysql.sock
Using server version 5.6.14-log
xtrabackup version 2.3.6 based on MySQL server 5.6.24 Linux (x86_64) (revision id: )
xtrabackup: uses posix_fadvise().
xtrabackup: cd to /opt/mysql/mysqldata/3306/data
xtrabackup: open files limit requested 10240, set to 10240
xtrabackup: using the following InnoDB configuration:
xtrabackup:   innodb_data_home_dir = ./
xtrabackup:   innodb_data_file_path = ibdata1:2048M:autoextend
xtrabackup:   innodb_log_group_home_dir = ./
xtrabackup:   innodb_log_files_in_group = 2
xtrabackup:   innodb_log_file_size = 268435456
170519 00:09:41 >> log scanned up to (1606489)
xtrabackup: Generating a list of tablespaces
InnoDB: Attempted to open a previously opened tablespace. Previous tablespace test/t uses space ID: 1 at filepath: ./test/t.ibd. Cannot open tablespace mysql/innodb_table_stats which uses space ID: 1 at filepath: ./mysql/innodb_table_stats.ibd
2017-05-19 00:09:42 7f5444a86720  InnoDB: Operating system error number 2 in a file operation.
InnoDB: The error means the system cannot find the path specified.
InnoDB: Error: could not open single-table tablespace file ./mysql/innodb_table_stats.ibd
InnoDB: We do not continue the crash recovery, because the table may become
InnoDB: corrupt if we cannot apply the log records in the InnoDB log to it.
InnoDB: To fix the problem and start mysqld:
InnoDB: 1) If there is a permission problem in the file and mysqld cannot
InnoDB: open the file, you should modify the permissions.
InnoDB: 2) If the table is not needed, or you can restore it from a backup,
InnoDB: then you can remove the .ibd file, and InnoDB will do a normal
InnoDB: crash recovery and ignore that table.
InnoDB: 3) If the file system or the disk is broken, and you cannot remove
InnoDB: the .ibd file, you can set innodb_force_recovery > 0 in my.cnf
InnoDB: and force InnoDB to continue crash recovery here.


mysql日志里面有：
2017-05-18 19:15:29 7fe4fc093700 InnoDB: Error: Table "mysql"."innodb_table_stats" not found.
2017-05-18 19:15:34 7fe4fc093700 InnoDB: Error: Table "mysql"."innodb_table_stats" not found.
2017-05-18 19:15:34 7fe4fc093700 InnoDB: Error: Fetch of persistent statistics requested for table "test"."t" but the required system tables mysql.innodb_table_stats and mysql.innodb_index_stats are not present or have unexpected structure. Using transient stats instead.
2017-05-18 19:15:48 7fe4843f9700 InnoDB: Error: Table "mysql"."innodb_table_stats" not found.

查询报错。
mysql> select count(*)from innodb_index_stats        ;
ERROR 1146 (42S02): Table 'mysql.innodb_index_stats' doesn't exist
mysql> select count(*)from innodb_table_stats        ;
ERROR 1146 (42S02): Table 'mysql.innodb_table_stats' doesn't exist
mysql> select count(*)from slave_master_info         ;
ERROR 1146 (42S02): Table 'mysql.slave_master_info' doesn't exist
mysql> select count(*)from slave_relay_log_info      ;
ERROR 1146 (42S02): Table 'mysql.slave_relay_log_info' doesn't exist
mysql> select count(*)from slave_worker_info         ;

ERROR 1146 (42S02): Table 'mysql.slave_worker_info' doesn't exist      

按下列步骤执行：

/* 
  temporary fix for problem with windows installer for MySQL 5.6.10 on Windows 7 machines.
  I did the procedure on a clean installed MySql, and it worked for me, at least it stopped
  lines of innodb errors in the log and the use of transient innodb tables. So, do it at
  your own risk..
  
  1. drop these tables from mysql:
     innodb_index_stats
     innodb_table_stats
     slave_master_info
     slave_relay_log_info
     slave_worker_info
 
  2. delete all .frm & .ibd of the tables above.
  
  3. run this file to recreate the tables above (source five-tables.sql).
  
  4. restart mysqld.
  
  Cheers, 
  CNL
*/


CREATE TABLE `innodb_index_stats` (
  `database_name` varchar(64) COLLATE utf8_bin NOT NULL,
  `table_name` varchar(64) COLLATE utf8_bin NOT NULL,
  `index_name` varchar(64) COLLATE utf8_bin NOT NULL,
  `last_update` timestamp NOT NULL DEFAULT CURRENT_TIMESTAMP ON UPDATE CURRENT_TIMESTAMP,
  `stat_name` varchar(64) COLLATE utf8_bin NOT NULL,
  `stat_value` bigint(20) unsigned NOT NULL,
  `sample_size` bigint(20) unsigned DEFAULT NULL,
  `stat_description` varchar(1024) COLLATE utf8_bin NOT NULL,
  PRIMARY KEY (`database_name`,`table_name`,`index_name`,`stat_name`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8 COLLATE=utf8_bin STATS_PERSISTENT=0;


CREATE TABLE `innodb_table_stats` (
  `database_name` varchar(64) COLLATE utf8_bin NOT NULL,
  `table_name` varchar(64) COLLATE utf8_bin NOT NULL,
  `last_update` timestamp NOT NULL DEFAULT CURRENT_TIMESTAMP ON UPDATE CURRENT_TIMESTAMP,
  `n_rows` bigint(20) unsigned NOT NULL,
  `clustered_index_size` bigint(20) unsigned NOT NULL,
  `sum_of_other_index_sizes` bigint(20) unsigned NOT NULL,
  PRIMARY KEY (`database_name`,`table_name`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8 COLLATE=utf8_bin STATS_PERSISTENT=0;


CREATE TABLE `slave_master_info` (
  `Number_of_lines` int(10) unsigned NOT NULL COMMENT 'Number of lines in the file.',
  `Master_log_name` text CHARACTER SET utf8 COLLATE utf8_bin NOT NULL COMMENT 'The name of the master binary log currently being read from the master.',
  `Master_log_pos` bigint(20) unsigned NOT NULL COMMENT 'The master log position of the last read event.',
  `Host` char(64) CHARACTER SET utf8 COLLATE utf8_bin NOT NULL DEFAULT '' COMMENT 'The host name of the master.',
  `User_name` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The user name used to connect to the master.',
  `User_password` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The password used to connect to the master.',
  `Port` int(10) unsigned NOT NULL COMMENT 'The network port used to connect to the master.',
  `Connect_retry` int(10) unsigned NOT NULL COMMENT 'The period (in seconds) that the slave will wait before trying to reconnect to the master.',
  `Enabled_ssl` tinyint(1) NOT NULL COMMENT 'Indicates whether the server supports SSL connections.',
  `Ssl_ca` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The file used for the Certificate Authority (CA) certificate.',
  `Ssl_capath` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The path to the Certificate Authority (CA) certificates.',
  `Ssl_cert` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The name of the SSL certificate file.',
  `Ssl_cipher` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The name of the cipher in use for the SSL connection.',
  `Ssl_key` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The name of the SSL key file.',
  `Ssl_verify_server_cert` tinyint(1) NOT NULL COMMENT 'Whether to verify the server certificate.',
  `Heartbeat` float NOT NULL,
  `Bind` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'Displays which interface is employed when connecting to the MySQL server',
  `Ignored_server_ids` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The number of server IDs to be ignored, followed by the actual server IDs',
  `Uuid` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The master server uuid.',
  `Retry_count` bigint(20) unsigned NOT NULL COMMENT 'Number of reconnect attempts, to the master, before giving up.',
  `Ssl_crl` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The file used for the Certificate Revocation List (CRL)',
  `Ssl_crlpath` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The path used for Certificate Revocation List (CRL) files',
  `Enabled_auto_position` tinyint(1) NOT NULL COMMENT 'Indicates whether GTIDs will be used to retrieve events from the master.',
  PRIMARY KEY (`Host`,`Port`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8 STATS_PERSISTENT=0 COMMENT='Master Information';


CREATE TABLE `slave_relay_log_info` (
  `Number_of_lines` int(10) unsigned NOT NULL COMMENT 'Number of lines in the file or rows in the table. Used to version table definitions.',
  `Relay_log_name` text CHARACTER SET utf8 COLLATE utf8_bin NOT NULL COMMENT 'The name of the current relay log file.',
  `Relay_log_pos` bigint(20) unsigned NOT NULL COMMENT 'The relay log position of the last executed event.',
  `Master_log_name` text CHARACTER SET utf8 COLLATE utf8_bin NOT NULL COMMENT 'The name of the master binary log file from which the events in the relay log file were read.',
  `Master_log_pos` bigint(20) unsigned NOT NULL COMMENT 'The master log position of the last executed event.',
  `Sql_delay` int(11) NOT NULL COMMENT 'The number of seconds that the slave must lag behind the master.',
  `Number_of_workers` int(10) unsigned NOT NULL,
  `Id` int(10) unsigned NOT NULL COMMENT 'Internal Id that uniquely identifies this record.',
  PRIMARY KEY (`Id`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8 STATS_PERSISTENT=0 COMMENT='Relay Log Information';


CREATE TABLE `slave_worker_info` (
  `Id` int(10) unsigned NOT NULL,
  `Relay_log_name` text CHARACTER SET utf8 COLLATE utf8_bin NOT NULL,
  `Relay_log_pos` bigint(20) unsigned NOT NULL,
  `Master_log_name` text CHARACTER SET utf8 COLLATE utf8_bin NOT NULL,
  `Master_log_pos` bigint(20) unsigned NOT NULL,
  `Checkpoint_relay_log_name` text CHARACTER SET utf8 COLLATE utf8_bin NOT NULL,
  `Checkpoint_relay_log_pos` bigint(20) unsigned NOT NULL,
  `Checkpoint_master_log_name` text CHARACTER SET utf8 COLLATE utf8_bin NOT NULL,
  `Checkpoint_master_log_pos` bigint(20) unsigned NOT NULL,
  `Checkpoint_seqno` int(10) unsigned NOT NULL,
  `Checkpoint_group_size` int(10) unsigned NOT NULL,
  `Checkpoint_group_bitmap` blob NOT NULL,
  PRIMARY KEY (`Id`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8 STATS_PERSISTENT=0 COMMENT='Worker Information';