hadoop SequenceFile介绍 大数据 存储

原文地址:http://tangjj.blog.51cto.com/blog/1848040/1532915

SequenceFile是一个由二进制序列化过的key/value的字节流组成的文本存储文件。

基于压缩类型CompressType,共有三种SequenceFile Writer:

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public  static  enum  CompressionType {
     /** 不压缩 */
     NONE, 
     /** 只压缩value */
     RECORD,
     /** 压缩很多记录的key/value成一块 */
     BLOCK
   }

There are three SequenceFile Writers based on the CompressType used to compress key/value pairs:

1、Writer : Uncompressed records.

SequenceFile里有Writer的实现,源码如下:

1
  public  static  class  Writer  implements  java.io.Closeable, Syncable

  

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  /** Write and flush the file header. */
     private  void  writeFileHeader() 
       throws  IOException {
       out.write(VERSION);
       Text.writeString(out, keyClass.getName());
       Text.writeString(out, valClass.getName());
        
       out.writeBoolean( this .isCompressed());
       out.writeBoolean( this .isBlockCompressed());
        
       if  ( this .isCompressed()) {
         Text.writeString(out, (codec.getClass()).getName());
       }
       this .metadata.write(out);
       out.write(sync);                        // write the sync bytes
       out.flush();                            // flush header
     }

首先SequenceFile文件有个表头,以上是写表头的代码,我们以一个实例结合代码来看一下表头的组成。

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package  demo;
  
import  java.io.IOException;
import  java.net.URI;
  
import  org.apache.hadoop.conf.Configuration;
import  org.apache.hadoop.fs.FileSystem;
import  org.apache.hadoop.fs.Path;
import  org.apache.hadoop.io.IOUtils;
import  org.apache.hadoop.io.IntWritable;
import  org.apache.hadoop.io.SequenceFile;
import  org.apache.hadoop.io.SequenceFile.CompressionType;
import  org.apache.hadoop.io.Text;
  
public  class  SequenceFileWriteDemo {
     private  static  final  String[] DATA = {  "One, two, buckle my shoe" ,
             "Three, four, shut the door" "Five, six, pick up sticks" ,
             "Seven, eight, lay them straight" "Nine, ten, a big fat hen"  };
  
     public  static  void  main(String[] args)  throws  IOException {
         String uri = args[ 0 ];
         Configuration conf =  new  Configuration();
         conf.set( "fs.defaultFS" "hdfs://xxx.xxx.xxx.xx:9000" );
         FileSystem fs = FileSystem.get(URI.create(uri), conf);
         Path path =  new  Path(uri);
         IntWritable key =  new  IntWritable();
         Text value =  new  Text();
         SequenceFile.Writer writer =  null ;
         try  {
             String compressType = args[ 1 ];
             System.out.println( "compressType " +compressType);
              
                 //  Writer : Uncompressed records. 
             if (compressType.equals( "1" ) ){
                 System.out.println( "compress none" );
                 writer = SequenceFile.createWriter(fs, conf, path, key.getClass(),value.getClass(),CompressionType.NONE);
             } else  if (compressType .equals( "2" ) ){
                 System.out.println( "compress record" );
                 //RecordCompressWriter : Record-compressed files, only compress values. 
                 writer = SequenceFile.createWriter(fs, conf, path, key.getClass(),value.getClass(),CompressionType.RECORD);    
             } else  if (compressType.equals( "3" ) ){
                 System.out.println( "compress block" );
                 //  BlockCompressWriter : Block-compressed files, both keys & values are collected in 'blocks' separately and compressed. The size of the 'block' is configurable. 
                 writer = SequenceFile.createWriter(fs, conf, path, key.getClass(),value.getClass(),CompressionType.BLOCK); 
             }
              
             for  ( int  i =  0 ; i <  100 ; i++) {
                 key.set( 100  - i);
                 value.set(DATA[i % DATA.length]);
                 System.out.printf( "[%s]\t%s\t%s\n" , writer.getLength(), key,value);
                 writer.append(key, value);
                  
             }
         finally  {
             IOUtils.closeStream(writer);
         }
     }
}

存入的文本文件内容如下:

key     value

100     One, two, buckle my shoe

99      Three, four, shut the door

98      Five, six, pick up sticks

97      Seven, eight, lay them straight

96      Nine, ten, a big fat hen

95      One, two, buckle my shoe

94      Three, four, shut the door

93      Five, six, pick up sticks

92      Seven, eight, lay them straight

91      Nine, ten, a big fat hen

90      One, two, buckle my shoe

89      Three, four, shut the door

88      Five, six, pick up sticks

87      Seven, eight, lay them straight

86      Nine, ten, a big fat hen

85      One, two, buckle my shoe

84      Three, four, shut the door

83      Five, six, pick up sticks

82      Seven, eight, lay them straight

81      Nine, ten, a big fat hen

80      One, two, buckle my shoe

79      Three, four, shut the door

78      Five, six, pick up sticks

77      Seven, eight, lay them straight

76      Nine, ten, a big fat hen

75      One, two, buckle my shoe

74      Three, four, shut the door

73      Five, six, pick up sticks

72      Seven, eight, lay them straight

71      Nine, ten, a big fat hen

70      One, two, buckle my shoe

69      Three, four, shut the door

68      Five, six, pick up sticks

67      Seven, eight, lay them straight

66      Nine, ten, a big fat hen

65      One, two, buckle my shoe

64      Three, four, shut the door

63      Five, six, pick up sticks

62      Seven, eight, lay them straight

61      Nine, ten, a big fat hen

60      One, two, buckle my shoe

59      Three, four, shut the door

58      Five, six, pick up sticks

57      Seven, eight, lay them straight

56      Nine, ten, a big fat hen

55      One, two, buckle my shoe

54      Three, four, shut the door

53      Five, six, pick up sticks

52      Seven, eight, lay them straight

51      Nine, ten, a big fat hen

50      One, two, buckle my shoe

49      Three, four, shut the door

48      Five, six, pick up sticks

47      Seven, eight, lay them straight

46      Nine, ten, a big fat hen

45      One, two, buckle my shoe

44      Three, four, shut the door

43      Five, six, pick up sticks

42      Seven, eight, lay them straight

41      Nine, ten, a big fat hen

40      One, two, buckle my shoe

39      Three, four, shut the door

38      Five, six, pick up sticks

37      Seven, eight, lay them straight

36      Nine, ten, a big fat hen

35      One, two, buckle my shoe

34      Three, four, shut the door

33      Five, six, pick up sticks

32      Seven, eight, lay them straight

31      Nine, ten, a big fat hen

30      One, two, buckle my shoe

29      Three, four, shut the door

28      Five, six, pick up sticks

27      Seven, eight, lay them straight

26      Nine, ten, a big fat hen

25      One, two, buckle my shoe

24      Three, four, shut the door

23      Five, six, pick up sticks

22      Seven, eight, lay them straight

21      Nine, ten, a big fat hen

20      One, two, buckle my shoe

19      Three, four, shut the door

18      Five, six, pick up sticks

17      Seven, eight, lay them straight

16      Nine, ten, a big fat hen

15      One, two, buckle my shoe

14      Three, four, shut the door

13      Five, six, pick up sticks

12      Seven, eight, lay them straight

11      Nine, ten, a big fat hen

10      One, two, buckle my shoe

9       Three, four, shut the door

8       Five, six, pick up sticks

7       Seven, eight, lay them straight

6       Nine, ten, a big fat hen

5       One, two, buckle my shoe

4       Three, four, shut the door

3       Five, six, pick up sticks

2       Seven, eight, lay them straight

1       Nine, ten, a big fat hen

把以上java 打成jar,执行hadoop jar sfile.jar  /test/numbers.seq  1  1代表不压缩

hadoop fs -get hdfs:///test/numbers1.seq   /usr/test/  取出刚刚生成的文件,我们用UE打开看一下

wKioL1PYosuT0dEAAAeWOPtPd4I375.jpg

0x53 0x45 0x51

这是SequenceFile Format的magic header「SEQ」,用来区别文本是否是「SequenceFile Format」。

0x06
版本编号,目前最新版为「SEQ6」

以上代码源码如下:

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  private  static  byte [] VERSION =  new  byte [] {
     ( byte ) 'S' , ( byte ) 'E' , ( byte ) 'Q' , VERSION_WITH_METADATA
   };
out.write(VERSION);

0x20 0x65........0x65

这部份是keyClassName(Key的类名),而第1个Byte(0x20)用来表示此字串的长度,此范例为org.apache.hadoop.io.IntWritable

以上代码源码如下:

1
  Text.writeString(out, keyClass.getName());

0x19 0x6F  ..... 0x74
这部份是valueClassName(Value的类名),第1个Byte(0x19)也是用来表示此字串的长度,此范例为org.apache.hadoop.io.BytesWritable

1
  Text.writeString(out, valClass.getName());


0x00
是否compression?「0x00」=否 (此为Boolean所以佔1个Byte)
0x00
是否blockCompression?「0x00」=否(此为Boolean所以佔1个Byte)

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    out.writeBoolean( this .isCompressed());
     out.writeBoolean( this .isBlockCompressed());

如果是压缩的话接下去还会写压缩类,此范例没有压缩所以没有此类名的写入,源码如下:

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  if  ( this .isCompressed()) {
         Text.writeString(out, (codec.getClass()).getName());
       }

0x00 0x00 0x00 0x00
metadata,此范例沒有包含任何metadata, 所以输出「0x00 0x00 0x00 0x00」

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   this .metadata.write(out);


0x76 0x61  ..... 0xAF
sync标记,用来表示一个「Header」的结束。

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byte [] sync;                           // 16 random bytes
     {
       try  {                                       
         MessageDigest digester = MessageDigest.getInstance( "MD5" );
         long  time = Time.now();
         digester.update(( new  UID()+ "@" +time).getBytes());
         sync = digester.digest();
       catch  (Exception e) {
         throw  new  RuntimeException(e);
       }
     }
      
out.write(sync);

至此头部文件写入完毕,可见头部的格式可以归纳如下:

  • version - 3 bytes of magic header SEQ, followed by 1 byte of actual version number (e.g. SEQ4 or SEQ6)

  • keyClassName -key class

  • valueClassName - value class

  • compression - A boolean which specifies if compression is turned on for keys/values in this file.

  • blockCompression - A boolean which specifies if block-compression is turned on for keys/values in this file.

  • compression codec - CompressionCodec class which is used for compression of keys and/or values (if compression is enabled).

  • metadata - Metadata for this file.

  • sync - A sync marker to denote end of the header. 


接下去我们看一下数据存储格式:

0x00 0x00 0x00 0x1D

整个Record的size ,一个Record包含「Key、Value」。此处为29个字节,因为 key=100 占4个字节,value=One, two, buckle my shoe 占24字节  还有一个字节存了value的长度 所以 29字节总共。

0x00 0x00 0x00 0x04

Key內容的size~ (此为Int所以占4个字节)

0x00 0x00 0x00 0x64

Key的内容,此处为100,那十六进制就是64

0x18

value内容的size,此处是One, two, buckle my shoe,长度24 所以十六进制就是18

0x4F 0X6E....0x65

value的内容One, two, buckle my shoe

以上代码源代码如下:



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  public  synchronized  void  append(Object key, Object val){
  .......
  // Write the record out
       checkAndWriteSync();                                 // sync
       out.writeInt(buffer.getLength());                    // total record length
       out.writeInt(keyLength);                             // key portion length
       out.write(buffer.getData(),  0 , buffer.getLength());  // data
  }


 当数据达到一个阀值,会写sync,写sync就是调用checkAndWriteSync();   源码如下:

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  synchronized  void  checkAndWriteSync()  throws  IOException {
       if  (sync !=  null  &&
           out.getPos() >= lastSyncPos+SYNC_INTERVAL) {  // time to emit sync
         sync();
       }
     }


SYNC_INTERVAL定义如下:

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   private  static  final  int  SYNC_HASH_SIZE =  16 ;    // number of bytes in hash 
   private  static  final  int  SYNC_SIZE =  4 +SYNC_HASH_SIZE;  // escape + hash
  
   /** The number of bytes between sync points.*/
   public  static  final  int  SYNC_INTERVAL =  100 *SYNC_SIZE;

可见每2000byte会写一个sync

SequeceFile 无压缩图示如下:

wKioL1PYrICwLFqTAADMaZlXygU864.jpg

可见格式如下:


Uncompressed SequenceFile Format
  • Header

  • Record

    • Record length

    • Key length

    • Key

    • Value 



接下去我们看一下RecordCompressWriter

2、RecordCompressWriter : Record-compressed files, only compress values.

执行hadoop jar sfile.jar  /test/numbers2.seq  2  2代表使用RecordCompressWriter压缩

同样我们用UE看一下生成的文件:

wKioL1PYsfmiPNENAAUQ3_N_2qc583.jpg

可见表头和不压缩的基本一致,有些小区别如下:

0x01

代表使用了压缩

0x2A 0x6F ....0x63

使用的压缩类org.apache.hadoop.io.compress.DefaultCodec

0x00 ...0x25

整个Record的size ,为37,为啥比不压缩占用的字节更多?

0x00 0x00 0x00 0x04

Key內容的size~ (此为Int所以占4个字节)

0x00 0x00 0x00 0x64

Key的内容,此处为100,那十六进制就是64 可见key没有压缩

以上源代码如下:

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  @Override
     @SuppressWarnings ( "unchecked" )
     public  synchronized  void  append(Object key, Object val)
       throws  IOException {
       if  (key.getClass() != keyClass)
         throw  new  IOException( "wrong key class: " +key.getClass().getName()
                               + " is not " +keyClass);
       if  (val.getClass() != valClass)
         throw  new  IOException( "wrong value class: " +val.getClass().getName()
                               + " is not " +valClass);
  
       buffer.reset();
  
       // Append the 'key'
       keySerializer.serialize(key);
       int  keyLength = buffer.getLength();
       if  (keyLength <  0 )
         throw  new  IOException( "negative length keys not allowed: "  + key);
  
       // Compress 'value' and append it
       deflateFilter.resetState();
       compressedValSerializer.serialize(val);
       deflateOut.flush();
       deflateFilter.finish();
  
       // Write the record out
       checkAndWriteSync();                                 // sync
       out.writeInt(buffer.getLength());                    // total record length
       out.writeInt(keyLength);                             // key portion length
       out.write(buffer.getData(),  0 , buffer.getLength());  // data
     }

SequeceFile 压缩value图示如下:

wKioL1PYtEzR5SvxAADrjXrWORY347.jpg

可见格式如下:

Record-Compressed SequenceFile Format
  • Header

  • Record

    • Record length

    • Key length

    • Key

    • Compressed Value 




接下去我们看一下BlockCompressWriter


3、BlockCompressWriter : Block-compressed files, both keys & values are collected in 'blocks' separately and compressed. The size of the 'block' is configurable. 

执行hadoop jar sfile.jar  /test/numbers3.seq  3  3代表使用BlockCompressWriter压缩

同样我们用UE看一下生成的文件:

wKiom1PYtg_jPHisAAb5S6yopr4305.jpg

可见表头和不压缩的基本一致,有些小区别如下:

0x01

代表使用了压缩

0x01

代表使用了block压缩

对于block压缩的源代码如下:

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  public  synchronized  void  append(Object key, Object val)
       throws  IOException {
       if  (key.getClass() != keyClass)
         throw  new  IOException( "wrong key class: " +key+ " is not " +keyClass);
       if  (val.getClass() != valClass)
         throw  new  IOException( "wrong value class: " +val+ " is not " +valClass);
  
       // Save key/value into respective buffers 
       int  oldKeyLength = keyBuffer.getLength();
       keySerializer.serialize(key);
       int  keyLength = keyBuffer.getLength() - oldKeyLength;
       if  (keyLength <  0 )
         throw  new  IOException( "negative length keys not allowed: "  + key);
       WritableUtils.writeVInt(keyLenBuffer, keyLength);
  
       int  oldValLength = valBuffer.getLength();
       uncompressedValSerializer.serialize(val);
       int  valLength = valBuffer.getLength() - oldValLength;
       WritableUtils.writeVInt(valLenBuffer, valLength);
        
       // Added another key/value pair
       ++noBufferedRecords;
        
       // Compress and flush?
       int  currentBlockSize = keyBuffer.getLength() + valBuffer.getLength();
       if  (currentBlockSize >= compressionBlockSize) {
         sync();
       }
     }

 其中,可见没调用一次append,就会相应累加keyLenBuffer和valLenBuffer的长度

 WritableUtils.writeVInt(keyLenBuffer, keyLength);

 WritableUtils.writeVInt(valLenBuffer, valLength);


 int currentBlockSize = keyBuffer.getLength() + valBuffer.getLength();

      if (currentBlockSize >= compressionBlockSize) {

        sync();

      }

compressionBlockSize =  conf.getInt("io.seqfile.compress.blocksize", 1000000);

当超过compressionBlockSize是会调用sync,我们来看看sync的源码,如下:

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   public  synchronized  void  sync()  throws  IOException {
       if  (noBufferedRecords >  0 ) {
         super .sync();
          
         // No. of records
         WritableUtils.writeVInt(out, noBufferedRecords);
          
         // Write 'keys' and lengths
         writeBuffer(keyLenBuffer);
         writeBuffer(keyBuffer);
          
         // Write 'values' and lengths
         writeBuffer(valLenBuffer);
         writeBuffer(valBuffer);
          
         // Flush the file-stream
         out.flush();
          
         // Reset internal states
         keyLenBuffer.reset();
         keyBuffer.reset();
         valLenBuffer.reset();
         valBuffer.reset();
         noBufferedRecords =  0 ;
       }

Sequenc File ,块压缩图示如下:

wKiom1PYuAzyjNGCAAEKo8iwV-o070.jpg

可见格式如下:

Block-Compressed SequenceFile Format
  • Header

  • Record Block

    • Uncompressed number of records in the block

    • Compressed key-lengths block-size

    • Compressed key-lengths block

    • Compressed keys block-size

    • Compressed keys block

    • Compressed value-lengths block-size

    • Compressed value-lengths block

    • Compressed values block-size

    • Compressed values block

  • A sync-marker every block. 

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