1、基于梯度的最优化方法OpenOpt:http://openopt.org/Welcome
2、遗传算法Pyevolve:https://pypi.python.org/pypi/Pyevolve/0.5
介绍文档:http://ftp.cbi.pku.edu.cn/pub/database/gene3d/gene3d/KG_PG_DATA/p12-perone.pdf
3、神经网络PyBrain:http://pybrain.org/pages/home
4、深度学习Theano:http://deeplearning.net/software/theano/