原文链接地址:http://www.cis.hut.fi/somtoolbox/package/docs2/somtoolbox.html
Demos
- som_demo1: SOM Toolbox demo 1: basic properties
- som_demo2: SOM Toolbox demo 2: basic usage
- som_demo3: SOM Toolbox demo 3: visualization
- som_demo4: SOM Toolbox demo 4: data analysis Creation of structs
- som_set: create & set (& check) values to structs
- som_info: print out information on a given struct
- som_data_struct: create & initialize a data struct
- som_map_struct: create & initialize a map struct
- som_topol_struct: create & initialize a topology struct
- som_train_struct: create & initialize a train struct
- som_clstruct: create a cluster struct
- som_clset: set properties in a cluster struct
- som_clget: get stuff from a cluster struct Struct conversion and file I/O
- som_vs1to2: converts a version 1.0 struct to version 2.0 struct
- som_vs2to1: converts a version 2.0 struct to version 1.0 struct
- som_read_data: reads a (SOM_PAK format) ASCII data file
- som_write_data: writes a SOM_PAK format codebook file
- som_write_cod: writes a SOM_PAK format data file
- som_read_cod: reads a SOM_PAK format codebook file Data preprocessing
- som_normalize: normalize data set
- som_denormalize: denormalize data set
- som_norm_variable: (de)normalize one variable
- preprocess: preprocessing GUI Initialization and training functions
- som_make: create, initialize and train a SOM
- som_randinit: random initialization algorithm
- som_lininit: linear initialization algorithm
- som_seqtrain: sequential training algorithm
- som_batchtrain: batch training algorithm
- som_gui: SOM initialization and training GUI
- som_prototrain: a simple version of sequential training: easy to modify Clustering algorithms
- som_kmeans: k-means algorithm
- kmeans_clusters: try and evaluate several k-means clusterings
- neural_gas: neural gas vector quantization algorithm
- som_linkage: hierarchical clustering algorithms
- som_cllinkage: hierarchical clustering of SOM
- som_dmatminima: local minima from distance (or U-) matrix
- som_dmatclusters: distance (or U-) matrix based clustering
- som_clspread: spreads clusters to unassinged map units
- som_cldist: calculate distances between clusters
- som_gapindex: gap validity index of clustering
- db_index: Davies-Bouldin validity index of clustering Supervised/classification algorithms
- som_supervised: supervised SOM algorithm
- lvq1: LVQ1 algorithm
- lvq3: LVQ3 algorithm
- knn: k-NN classification algorithm
- knn_old: k-NN classification algorithm (old version) SOM error measures
- som_quality: quantization and topographic error of SOM
- som_distortion: SOM distortion measure
- som_distortion3: elements of the SOM distortion measure Auxiliary functions
- som_bmus: calculates BMUs for given data vectors
- som_eucdist2: pairwise squared euclidian distances between vectors
- som_mdist: calculates pairwise distances between vectors
- som_divide: extract subsets of data based on map
- som_label: give labels to map units
- som_label2num: rcodes string data labels to interger class labels
- som_autolabel: automatically labels the SOM based on given data
- som_unit_coords: calculates coordinates in output space for map units
- som_unit_dists: distances in output space between map units
- som_unit_neighs: units in 1-neighborhood for each map unit
- som_neighborhood: calculates neighborhood matrix for the given map
- som_neighbors: calculates different kinds of neighborhoods
- som_neighf: calculates neighborhood function values
- som_select: GUI for manual selection of map units
- som_estimate_gmm: create Gaussian mixture model on top of SOM
- som_probability_gmm: evaluate Gaussian mixture model
- som_ind2sub: from linear index to subscript index
- som_sub2ind: from subscript index to linear index
- som_ind2cod: from linear index to SOM_PAK linear index
- som_cod2ind: from SOM_linear index to SOM_PAK linear index
- nanstats: mean, std and median which ignore NaNs
- som_modify_dataset: add, remove, or extract samples and components
- som_fillnans: fill NaNs in a data set based on given SOM
- som_stats: statistics of a data set
- som_drmake: calculate descriptive rules for a cluster
- som_dreval: evaluate descriptive rules for a cluster
- som_drsignif: rule significance measures Using SOM_PAK from Matlab
- som_sompaktrain: uses SOM_PAK to train a map
- sompak_gui: GUI for using SOM_PAK from Matlab
- sompak_init: call SOM_PAK's initialization programs from Matlab
- sompak_init_gui: GUI for using SOM_PAK's initialization from Matlab
- sompak_rb_control: an auxiliary function for sompak_*_gui functions.
- sompak_sammon: call SOM_PAK's Sammon program from Matlab
- sompak_sammon_gui: GUI for using SOM_PAK's Sammon program from Matlab
- sompak_train: call SOM_PAK's training program from Matlab
- sompak_train_gui: GUI for using SOM_PAK's training program from Matlab Visualization
- som_show: basic visualization
- som_show_add: add labels, hits and trajectories
- som_show_clear: remove extra markers
- som_recolorbar: refresh/reconfigure colorbars
- som_show_gui: GUI for using som_show and associated functions
- som_grid: visualization of SOM grid
- som_cplane: component planes and U-matrices
- som_barplane: bar chart visualization of map
- som_pieplane: pie chart visualization of map
- som_plotplane: plot chart visualization of map
- som_trajectory: launches a GUI for presenting comet-trajectories
- som_dendrogram: visualization of clustering tree
- som_plotmatrix: pairwise scatter plots and histograms
- som_order_cplanes: order and visualize the component planes
- som_clplot: plots of clusters (based on cluster struct)
- som_projections_plot: projections plots (see som_projections)
- som_stats_plot: plots of statistics (see som_stats) Auxiliary functions for visualization
- hits: calculates hits, or sum of values for each map unit
- som_hits: calculates the response of data on the map
- som_umat: calculates the U-matrix
- cca: curvilinear component analysis projection algorithm
- pcaproj: principal component projection algorithm
- sammon: Sammon's mapping projection algorithm
- som_connection: connection matrix for map
- som_vis_coords: map unit coordinates used in visualizations
- som_colorcode: create color coding for map/2D data
- som_bmucolor: colors of the BMUs from a given map color code
- som_normcolor: simulate indexed colormap
- som_clustercolor: color coding which depends on clustering structure
- som_kmeanscolor: color coding according to k-means clustering
- som_kmeanscolor2: a newer version of the som_kmeanscolor function
- som_fuzzycolor: a fuzzy color coding
- som_coloring: a SOM-based color coding
- som_projections: calculates a default set of projections Report generation stuff
- som_table_struct: creates a table struct
- som_table_modify: modifies a table struct
- som_table_print: print a table in various formats
- rep_utils: various utilities for printing report elements
- som_stats_table: a table of data set statistics
- som_stats_report: report on data set statistics Low level routines used by visualization functions
- vis_patch: defines hexagonal and rectangular patches
- vis_som_show_data: returns UserData and subplot handles stored by som_show.m
- vis_valuetype: used for type checks
- vis_footnote: adds a movable text to the current figure
- vis_trajgui: the actual GUI started by som_trajectory.m
- vis_PlaneAxisProperties: set axis properties in visualization functions
- vis_footnoteButtonDownFcn: callback function for vis_footnote.m
- vis_planeGetArgs: converts topol struct to lattice, msize argument pair
- vis_show_gui_comp: internal function used by som_show_gui.m
- vis_show_gui_tool: internal function used by som_show_gui.m Other
- somtoolbox: this file
- iris.data: IRIS data set (used in demos)
- License.txt: GNU General Public License
- Copyright.txt: Copyright notice
- Contents: Overview of SOM Toolbox functions
Alphabetical order
Contents | Overview of SOM Toolbox functions |
Copyright.txt | Copyright notice |
License.txt | GNU General Public License |
cca | curvilinear component analysis projection algorithm |
db_index | Davies-Bouldin validity index of clustering |
hits | calculates hits, or sum of values for each map unit |
iris.data | IRIS data set (used in demos) |
kmeans_clusters | try and evaluate several k-means clusterings |
knn | k-NN classification algorithm |
knn_old | k-NN classification algorithm (old version) |
lvq1 | LVQ1 algorithm |
lvq3 | LVQ3 algorithm |
nanstats | mean, std and median which ignore NaNs |
neural_gas | neural gas vector quantization algorithm |
pcaproj | principal component projection algorithm |
preprocess | preprocessing GUI |
rep_utils | various utilities for printing report elements |
sammon | Sammon's mapping projection algorithm |
som_autolabel | automatically labels the SOM based on given data |
som_barplane | bar chart visualization of map |
som_batchtrain | batch training algorithm |
som_bmucolor | colors of the BMUs from a given map color code |
som_bmus | calculates BMUs for given data vectors |
som_cldist | calculate distances between clusters |
som_clget | get stuff from a cluster struct |
som_cllinkage | hierarchical clustering of SOM |
som_clplot | plots of clusters (based on cluster struct) |
som_clset | set properties in a cluster struct |
som_clspread | spreads clusters to unassinged map units |
som_clstruct | create a cluster struct |
som_clustercolor | color coding which depends on clustering structure |
som_cod2ind | from SOM_linear index to SOM_PAK linear index |
som_colorcode | create color coding for map/2D data |
som_coloring | a SOM-based color coding |
som_connection | connection matrix for map |
som_cplane | component planes and U-matrices |
som_data_struct | create & initialize a data struct |
som_demo1 | SOM Toolbox demo 1: basic properties |
som_demo2 | SOM Toolbox demo 2: basic usage |
som_demo3 | SOM Toolbox demo 3: visualization |
som_demo4 | SOM Toolbox demo 4: data analysis |
som_dendrogram | visualization of clustering tree |
som_denormalize | denormalize data set |
som_distortion | SOM distortion measure |
som_distortion3 | elements of the SOM distortion measure |
som_divide | extract subsets of data based on map |
som_dmatclusters | distance (or U-) matrix based clustering |
som_dmatminima | local minima from distance (or U-) matrix |
som_dreval | evaluate descriptive rules for a cluster |
som_drmake | calculate descriptive rules for a cluster |
som_drsignif | rule significance measures |
som_estimate_gmm | create Gaussian mixture model on top of SOM |
som_eucdist2 | pairwise squared euclidian distances between vectors |
som_fillnans | fill NaNs in a data set based on given SOM |
som_fuzzycolor | a fuzzy color coding |
som_gapindex | gap validity index of clustering |
som_grid | visualization of SOM grid |
som_gui | SOM initialization and training GUI |
som_hits | calculates the response of data on the map |
som_ind2cod | from linear index to SOM_PAK linear index |
som_ind2sub | from linear index to subscript index |
som_info | print out information on a given struct |
som_kmeans | k-means algorithm |
som_kmeanscolor | color coding according to k-means clustering |
som_kmeanscolor2 | a newer version of the som_kmeanscolor function |
som_label | give labels to map units |
som_label2num | rcodes string data labels to interger class labels |
som_lininit | linear initialization algorithm |
som_linkage | hierarchical clustering algorithms |
som_make | create, initialize and train a SOM |
som_map_struct | create & initialize a map struct |
som_mdist | calculates pairwise distances between vectors |
som_modify_dataset | add, remove, or extract samples and components |
som_neighborhood | calculates neighborhood matrix for the given map |
som_neighbors | calculates different kinds of neighborhoods |
som_neighf | calculates neighborhood function values |
som_norm_variable | (de)normalize one variable |
som_normalize | normalize data set |
som_normcolor | simulate indexed colormap |
som_order_cplanes | order and visualize the component planes |
som_pieplane | pie chart visualization of map |
som_plotmatrix | pairwise scatter plots and histograms |
som_plotplane | plot chart visualization of map |
som_probability_gmm | evaluate Gaussian mixture model |
som_projections | calculates a default set of projections |
som_projections_plot | projections plots (see som_projections) |
som_prototrain | a simple version of sequential training: easy to modify |
som_quality | quantization and topographic error of SOM |
som_randinit | random initialization algorithm |
som_read_cod | reads a SOM_PAK format codebook file |
som_read_data | reads a (SOM_PAK format) ASCII data file |
som_recolorbar | refresh/reconfigure colorbars |
som_select | GUI for manual selection of map units |
som_seqtrain | sequential training algorithm |
som_set | create & set (& check) values to structs |
som_show | basic visualization |
som_show_add | add labels, hits and trajectories |
som_show_clear | remove extra markers |
som_show_gui | GUI for using som_show and associated functions |
som_sompaktrain | uses SOM_PAK to train a map |
som_stats | statistics of a data set |
som_stats_plot | plots of statistics (see som_stats) |
som_stats_report | report on data set statistics |
som_stats_table | a table of data set statistics |
som_sub2ind | from subscript index to linear index |
som_supervised | supervised SOM algorithm |
som_table_modify | modifies a table struct |
som_table_print | print a table in various formats |
som_table_struct | creates a table struct |
som_topol_struct | create & initialize a topology struct |
som_train_struct | create & initialize a train struct |
som_trajectory | launches a GUI for presenting comet-trajectories |
som_umat | calculates the U-matrix |
som_unit_coords | calculates coordinates in output space for map units |
som_unit_dists | distances in output space between map units |
som_unit_neighs | units in 1-neighborhood for each map unit |
som_vis_coords | map unit coordinates used in visualizations |
som_vs1to2 | converts a version 1.0 struct to version 2.0 struct |
som_vs2to1 | converts a version 2.0 struct to version 1.0 struct |
som_write_cod | writes a SOM_PAK format data file |
som_write_data | writes a SOM_PAK format codebook file |
sompak_gui | GUI for using SOM_PAK from Matlab |
sompak_init | call SOM_PAK's initialization programs from Matlab |
sompak_init_gui | GUI for using SOM_PAK's initialization from Matlab |
sompak_rb_control | an auxiliary function for sompak_*_gui functions. |
sompak_sammon | call SOM_PAK's Sammon program from Matlab |
sompak_sammon_gui | GUI for using SOM_PAK's Sammon program from Matlab |
sompak_train | call SOM_PAK's training program from Matlab |
sompak_train_gui | GUI for using SOM_PAK's training program from Matlab |
somtoolbox | this file |
vis_PlaneAxisProperties | set axis properties in visualization functions |
vis_footnote | adds a movable text to the current figure |
vis_footnoteButtonDownFcn | callback function for vis_footnote.m |
vis_patch | defines hexagonal and rectangular patches |
vis_planeGetArgs | converts topol struct to lattice, msize argument pair |
vis_show_gui_comp | internal function used by som_show_gui.m |
vis_show_gui_tool | internal function used by som_show_gui.m |
vis_som_show_data | returns UserData and subplot handles stored by som_show.m |
vis_trajgui | the actual GUI started by som_trajectory.m |
vis_valuetype | used for type checks |