从MIT-LCP团队的GitHub上了解到,近日该团队更新了mimic-code至v2.5.0版本,该版本的发布重点是对MIMIC-IV 3.0的支持,当然还是对2.4.0版本代码中错误或遗留进行了必要的更新。
MIMIC3或者MIMIC-IV 3.0安装,可以加微信:idata01
Major changes
- Linting/formatting SQL files with sqlfluff
- Converting BigQuery syntax SQL to postgres/duckdb using sqlglot
- Improvements in concept queries (thanks everyone for contributing!)
What's Changed
- Add linting of SQL files using sqlfluff by @alistairewj in #1480
- Postgres shell script update by @alistairewj in #1482
- Fixed an error: Line 90, an L is missing, by @lewis738 in #1503
- fix NULL typo at mysql buildmimic-iv load.sql by @asha-ndf in #1502
- Fix gh db build by @alistairewj in #1504
- fix issue 1279 by @yongfanbeta in #1497
- Improvements for duckdb by @alistairewj in #1489
- fix gh actions by @alistairewj in #1506
- Fix norepinephrine in PSQL, tidy vasoactive code by @alistairewj in #1505
- Update load.sql by @trostalski in #1492
- Create view for code_status in MIMIC-IV by @ajb5d in #1291
- fix typo in extraction of diabetes_without_cc by @alistairewj in #1508
- change dir as import_duckdb relies on relative dirs by @alistairewj in #1509
- Streamlining and updating Postgres building process for mimic-iv, mimic-iv-notes, mimic-iv-ed by @stefanhgm in #1537
- fix: MIMIC Note README.md by @aegis301 in #1592
- remove stale/broken docker scripts, see #684 by @alistairewj in #1635
- fixing wrong mimic-iv folder name by @fvillena in #1639
- Fix constraint.sql for mimic-iv-ed PostgreSQL by @SimonUzL in #1659
- Add the 'load_7z.sql' script to enable the loading of 'ed' module dat… by @notwarn in #1656
- Changed column widths to import data without truncating by @KenjiOhtsuka in #1608
- Update code_status.sql by @SichengH in #1676
- fix sapsii and oasis score based on issue 1568 by @yongfanbeta in #1587
- nsaid & acei medication by @Juan-L-Dominguez in #1680
- Add duckdb build/concepts and use SQLGlot to convert BigQuery SQL into other dialects by @alistairewj in #1689
- Add procedures mappings for MIMIC-IV v2.0 - SSSOM format by @a-chahin in #1419
- Fix GitHub CI by using a Python container by @alistairewj in #1783
- Increase admissions language length for postgres schema by @MB-Finski in #1776
- SQLite python improvements by @alistairewj in #1784
- Sqlglot fixes by @alistairewj in #1786
- add validate.sql for mimic-iv-note by @Jin-Zhang-Yaoguang in #1687
- Fix SQLite build using all CSV files by @alistairewj in #1788
- ARBs SQL by @Juan-L-Dominguez in #1690
- Add ARB by @alistairewj in #1789
- fix #1354 by @rustamzh in #1785
- Fix bug: Columns dislocation in the 'emar' table. by @Scott1743 in #1779
- fix: Readme mimic-iv postgres build and concepts links by @chamathpali in #1685