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1原创 Error in utils::browseURL(appUrl) : ‘browser‘必需为非空字符串
options(browser="firefox")
2024-01-24 21:29:42
409
原创 apply 按行处理
myNormalize <- function(target){(target-mean(target))/sd(target)}scale_data <- apply(count_RNA_table,1,myNormalize)
2023-12-27 19:10:29
353
原创 Can‘t locate BioPerl.pm in @INC (you may need to install the BioPerl module)
进入一个新的环境，然后conda install -c bioconda perl-bioperl。
2023-12-22 21:27:26
430
原创 undefined symbol: PyUnicodeUCS2_FromStringAndSize
用python2.7安装bx-python的时候，报了这个错误undefined symbol: PyUnicodeUCS2_FromStringAndSize。我是用pip install 安装的。现在换为conda install -c bioconda bx-python，就可以了。
2023-07-20 08:45:02
280
原创 彩色图片转化为灰白图片
from PIL import Imageimage = Image.open("he_roi_small.png")bw_image = image.convert("L")bw_image.save("imwrite_pic.png")
2023-07-10 15:07:46
35
原创 玉米GO分析在线网站
All GO enrichment were performed using shinyGO V0.61 (http://bio-informatics.sdstate.edu/go/) with an FDA of 0.05.
2023-06-25 11:21:17
65
原创 gff转化为gtf
如果报错：ClobberError: This transaction has incompatible packages duo to a shared path。那么 conda clean --all。
2023-05-09 22:23:20
241
原创 format python
F=[]for j in range(5): F.append('p{}'.format(j))F 变成 p1,p2,p3,p4
2021-11-18 11:32:32
330
原创 品种特异位点，利用样本vcf参照打分
import pandas as pddf = pd.read_csv("labuladuo_loci.txt")quanshe = pd.read_table("北京犬舍.vcf")loci_list = quanshe['ID'].value.tolist()vareity_list = quanshe.columns.tolist()score = {}for variety in variety_list: score[variety] = 0quanshe.set_in...
2021-11-05 16:32:37
248
原创 绘制聚类热图
import numpy as npimport pandas as pdimport seaborn as snsfrom sklearn import preprocessingimport matplotlib.pyplot as plt#将数据转化为数据框，gene_id作为索引列retu = pd.read_table("Embro_Gene_ID.bed",index_col="gene_id")retu.index.name='Z-score normalization'#Zs
2021-11-04 14:45:46
646
原创 kmer GWAS github
https://github.com/voichek/kmersGWAS/tree/master/examples
2021-10-29 09:33:51
212
原创 用kmer做gwas分析
Identifying genetic variants underlying phenotypic variation in plants without complete genomes
2021-10-28 18:56:20
333
原创 犬只的放牧，猎捕，性情以及可训性的基因分析
Genome-Wide Association Studies Reveal Neurological Genes for Dog Herding, Predation, Temperament, and Trainability Traits
2021-10-27 14:50:44
49
原创 狗狗害怕的基因
A novel genomic region on chromosome 11 associated with fearfulness in dogs
2021-10-27 14:48:00
43
原创 德牧行为分析
Genetic dissection of complexbehaviourtraits in German Shepherddogs.也说明了在一种犬种做研究，避免背景干扰
2021-10-27 12:27:22
63
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