IDP-ASE(haplotyping and quantifying allele-specific expression at the gene and gene isoform level by...

最新推荐文章于 2024-09-27 10:11:28 发布

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最新推荐文章于 2024-09-27 10:11:28 发布

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原文链接：http://www.cnblogs.com/linglingtingfei/p/7612791.html

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Prepare necessary input files （http://www.cnblogs.com/renping/p/7488170.html）（http://www.cnblogs.com/renping/p/7391028.html ）

VCF File
GPD File in Extended Format. You can utilize the accompanying script to convert from regular GPD to extended GPD.
```
 julia ~/.julia/v0.4/IDPASE/scripts/convert_gpd.jl mygpd.gpd > newgpd.gpd
```
PSL alignment file of your hybrid-Seq data. You can convert from SAM/BAM to psl using libraries such as Au-public utilties in particular the sam_to_psl.py script.
FASTQ file of your hybrid-Seq data

Annotation fileGenepred file in extended format

VCF fileList of biallelic, exonic SNPs in VCF format -------（#通过ANNOVAR对all_snp.vcf文件进行注释得到）

转载于:https://www.cnblogs.com/linglingtingfei/p/7612791.html