OPNML/MATLAB Facilities
http://www.opnml.unc.edu/OPNML_Matlab/
Mesh Generation
http://www.cs.cornell.edu/home/vavasis/qmg-home.html
OpenFEM : An Open-Source Finite Element Toolbox
http://www.openfem.net/
CALFEM is an interactive computer program for teaching the finite element method (FEM)
http://www.byggmek.lth.se/Calfem/frinfo.htm
The Engineering Vibration Toolbox
http://www.cs.wright.edu/people/faculty/jslater/vtoolbox/vtoolbox.html
SaGA - Spatial and Geometric Analysis Toolbox
by Kirill K. Pankratov
http://puddle.mit.edu/~glenn/kirill/saga.html
MexCDF and NetCDF Toolbox For Matlab-5&6
http://woodshole.er.usgs.gov/staffpages/cdenham/public_html/MexCDF/nc4ml5.html
CUEDSID: Cambridge University System Identification Toolbox
http://www-control.eng.cam.ac.uk/jmm/cuedsid/
Kriging Toolbox
http://www.ai-geostats.org/software/Geostats_software/MATLAB_KRIGING_TOOLBOX.htm
Monte Carlo (Dr Nando)
http://www.cs.ubc.ca/~nando/software.html
RIOTS - The Most Powerful Optimal Control Problem Solver
http://blank.hypersurf.com/~adam/RIOTS/
Excel
MATLAB xlsheets
http://www.mathworks.com/matlabcentral/fileexchange/loadFile.do?objectId=4474&objectType=file
write2excel
http://www.mathworks.com/matlabcentral/fileexchange/loadFile.do?objectId=4414&objectType=file
Finite Element Modeling (FEM) (Top)
OpenFEM - An Open-Source Finite Element Toolbox
http://www.openfem.net/
NLFET - nonlinear finite element toolbox for MATLAB ( framework for setting up, solving, and interpreting results for nonlinear static and dynamic finite element analysis.)
http://nlfet.sourceforge.net/
GetFEM - C++ library for finite element methods elementary computations with a Matlab interface
http://www.gmm.insa-tlse.fr/getfem/
FELIPE - FEA package to view results ( contains neat interface to MATLA
http://www.brunel.ac.uk/~blstmbr/felipe/
Finance (Top)
A NEW MATLAB-BASED TOOLBOX FOR COMPUTER AIDED DYNAMIC TECHNICAL TRADING
Stephanos Papadamou and George Stephanides
Department of Applied Informatics, University Of Macedonia Economic & Social Sciences, Thessaloniki, Greece
http://www.fenews.com/fen31/one_time_articles/dynamic_tech_trade_matlab6.htm
Paper: http://econwpa.wustl.edu:8089/eps/prog/papers/0201/0201001.pdf
CompEcon Toolbox for Matlab
http://www4.ncsu.edu/~pfackler/compecon/toolbox.html
Genetic Algorithms (Top)
The Genetic Algorithm Optimization Toolbox (GAOT) for Matlab 5
http://www.ie.ncsu.edu/mirage/GAToolBox/gaot/
Genetic Algorithm Toolbox
Written & distributed by Andy Chipperfield (Sheffield University, UK)
http://www.shef.ac.uk/uni/projects/gaipp/gatbx.html
Manual: http://www.shef.ac.uk/~gaipp/ga-toolbox/manual.pdf
Genetic and Evolutionary Algorithm Toolbox (GEATbx)
http://www.geatbx.com/
Evolutionary Algorithms for MATLAB
http://www.geatbx.com/links/ea_matlab.html
Genetic/Evolutionary Algorithms for MATLAB
http://www.systemtechnik.tu-ilmenau.de/~pohlheim/EA_Matlab/ea_matlab.html
Graphics
VideoToolbox (C routines for visual psychophysics on Macs by Denis Pelli)
http://vision.nyu.edu/VideoToolbox/
Paper: http://psych.nyu.edu/pelli/pubs/pelli1997videotoolbox.pdf
4D toolbox
http://www.nmr.mgh.harvard.edu/~daniel/links/matlab/4DToolbox.html
Images (Top)
Eyelink Toolbox
http://psychtoolbox.org/eyelinktoolbox/
Paper: http://psychtoolbox.org/eyelinktoolbox/EyelinkToolbox.pdf
CellStats: Automated statistical analysis of color-stained cell images in Matlab
http://sigwww.cs.tut.fi/TICSP/CellStats/
SDC Morphology Toolbox for MATLAB (powerful collection of latest state-of-the-art gray-scale morphological tools that can be applied to image segmentation, non-linear filtering, pattern recognition and image analysis)
http://www.mmorph.com/
Image Acquisition Toolbox
http://www.mathworks.com/products/imaq/
Halftoning Toolbox for MATLAB
http://www.ece.utexas.edu/~bevans/projects/halftoning/toolbox/index.html
DIPimage - A Scientific Image Processing Toolbox for MATLAB
http://www.ph.tn.tudelft.nl/DIPlib/dipimage_1.html
PNM Toolbox
http://home.online.no/~pjacklam/matlab/software/pnm/index.html
Another
ICA / KICA and KPCA (Top)
ICA TU Toolbox
http://mole.imm.dtu.dk/toolbox/menu.html
MISEP Linear and Nonlinear ICA Toolbox
http://neural.inesc-id.pt/~lba/ica/mitoolbox.html
Kernel Independant Component Analysis
http://www.cs.berkeley.edu/~fbach/kernel-ica/index.htm
Matlab: kernel-ica version 1.2
KPCA- Please check the software section of kernel machines.
Kernel
Statistical Pattern Recognition Toolbox
http://cmp.felk.cvut.cz/~xfrancv/stprtool/
MATLABArsenal A MATLAB Wrapper for Classification
http://finalfantasyxi.inf.cs.cmu.edu/tmp/MATLABArsenal.htm
Markov (Top)
MapHMMBOX 1.1 - Matlab toolbox for Hidden Markov Modelling using Max. Aposteriori EM
Prerequisites: Matlab 5.0, Netlab. Last Updated: 18 March 2002.
http://www.robots.ox.ac.uk/~parg/software/maphmmbox_1_1.tar
HMMBOX 4.1 - Matlab toolbox for Hidden Markov Modelling using Variational Bayes
Prerequisites: Matlab 5.0,Netlab. Last Updated: 15 February 2002..
http://www.robots.ox.ac.uk/~parg/software/hmmbox_3_2.tar
http://www.robots.ox.ac.uk/~parg/software/hmmbox_4_1.tar
Markov Decision Process (MDP) Toolbox for Matlab
Kevin Murphy, 1999
http://www.ai.mit.edu/~murphyk/Software/MDP/MDP.zip
Markov Decision Process (MDP) Toolbox v1.0 for MATLAB
http://www.inra.fr/bia/T/MDPtoolbox/
Hidden Markov Model (HMM) Toolbox for Matlab
http://www.ai.mit.edu/~murphyk/Software/HMM/hmm.html
Bayes Net Toolbox for Matlab
http://www.ai.mit.edu/~murphyk/Software/BNT/bnt.html
Medical (Top)
EEGLAB Open Source Matlab Toolbox for Physiological Research (formerly ICA/EEG Matlab toolbox)
http://www.sccn.ucsd.edu/~scott/ica.html
MATLAB Biomedical Signal Processing Toolbox
http://bsp.pdx.edu/Toolbox/
Powerful package for neurophysiological data analysis ( Igor Kagan webpage)
http://igoresha.virtualave.net/Matlab/Unitret.html
EEG / MRI Matlab Toolbox
http://eeg.sourceforge.net/
Microarray data analysis toolbox (MDAT): for normalization, adjustment and analysis of gene expression_r data.
Knowlton N, Dozmorov IM, Centola M. Department of Arthritis and Immunology, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA 73104. We introduce a novel Matlab toolbox for microarray data analysis. This toolbox uses normalization based upon a normally
distributed background and differential gene expression_r based on 5 statistical measures. The objects in this toolbox are open source and can be implemented to suit your application. AVAILABILITY: MDAT v1.0 is a Matlab toolbox and requires Matlab to run.
MDAT is freely available at:
http://microarray.omrf.org/publications/2004/knowlton/MDAT.zip
MIDI (Top)
MIDI Toolbox version 1.0 (GNU General Public License)
http://www.jyu.fi/musica/miditoolbox/
Misc. (Top)
MATLAB-The Graphing Tool
http://sprg.ssl.berkeley.edu/~abrecht/matlab.html
3-D Circuits The Circuit Animation Toolbox for MATLAB
http://engineering.dartmouth.edu/other/3Dcircuits/
SendMail
http://carol.wins.uva.nl/~portegie/matlab/sendmail/
Coolplot
http://www.reimeika.ca/marco/matlab/coolplots.html
MPI (Matlab Parallel Interface)
Cornell Multitask Toolbox for MATLAB
http://www.tc.cornell.edu/Services/Software/CMTM/
Beolab Toolbox for v6.5
Thomas Abrahamsson (Professor, Chalmers University of Technology, Applied Mechanics, G?teborg, Sweden)
http://www.mathworks.nl/matlabcentral/fileexchange/loadFile.do?objectId=1216&objectType=file
PARMATLAB
Neural Networks (Top)
SOM Toolbox
http://www.cis.hut.fi/projects/somtoolbox/
Bayes Net Toolbox for Matlab
http://www.ai.mit.edu/~murphyk/Software/BNT/bnt.html
NetLab
http://www.ncrg.aston.ac.uk/netlab/
Random Neural Networks
http://www.cs.ucf.edu/~ahossam/rnnsimv2/
ftp: ftp://ftp.mathworks.com/pub/contrib/v5/nnet/rnnsimv2/
NNSYSID Toolbox (tools for neural network based identification of nonlinear dynamic systems)
http://www.iau.dtu.dk/research/control/nnsysid.html
Oceanography (Top)
WAFO. Wave Analysis for Fatigue and Oceanography
http://www.maths.lth.se/matstat/wafo/
ADCP toolbox for MATLAB (USGS, USA)
Presented at the Hydroacoustics Workshop in Tampa and at ADCP's in Action in San Diego
http://woodshole.er.usgs.gov/operations/stg/pubs/ADCPtools
SEA-MAT - Matlab Tools for Oceanographic Analysis
A collaborative effort to organize and distribute Matlab tools for the Oceanographic Community
http://sea-mat.whoi.edu/
Ocean Toolbox
http://www.mar.dfo-mpo.gc.ca/science/ocean/epsonde/programming.html
EUGENE D. GALLAGHER
(Associate Professor, Environmental, Coastal & Ocean Sciences)
http://www.es.umb.edu/edgwebp.htm
Optimization (Top)
MODCONS - a MATLAB Toolbox for Multi-Objective Control System Design
http://www.eee.kcl.ac.uk/mecheng/jfw/modcons.html
Lazy Learning Package
http://iridia.ulb.ac.be/~lazy/
SDPT3 version 3.02 -- a MATLAB software for semidefinite-quadratic-linear programming
http://www.math.nus.edu.sg/~mattohkc/sdpt3.html
Minimum Enclosing Balls: Matlab Code
http://www.compgeom.com/meb/
SOSTOOLS Sum of Squares Optimization Toolbox for MATLAB User’s guide
http://www.cds.caltech.edu/sostools/sostools.pdf
PSOt - a Particle Swarm Optimization Toolbox for use with Matlab
By Brian Birge ... A Particle Swarm Optimization Toolbox (PSOt) for use with the Matlab scientific programming environment has been developed. PSO is
introduced briefly and then the use of the toolbox is explained with some examples. A link to downloadable code is provided.
Plot
http://globec.whoi.edu/software/plotting/gbplot/
Signal Processing (Top)
Filter Design with Motorola DSP56K
http://www.ee.ryerson.ca:8080/~mzeytin/dfp/index.html
Change Detection and Adaptive Filtering Toolbox
http://www.sigmoid.se/
Signal Processing Toolbox
http://www.mathworks.com/products/signal/
ICA TU Toolbox
http://mole.imm.dtu.dk/toolbox/menu.html
Time-Frequency Toolbox for Matlab
http://crttsn.univ-nantes.fr/~auger/tftb.html
VoiceBox - Speech Processing Toolbox
http://www.ee.ic.ac.uk/hp/staff/dmb/voicebox/voicebox.html
Least Squared - Support Vector Machines (LS-SVM)
http://www.esat.kuleuven.ac.be/sista/lssvmlab/
WaveLab802 : the Wavelet Toolbox
By David Donoho, Mark Reynold Duncan, Xiaoming Huo, Ofer Levi
http://www-stat.stanford.edu/~wavelab/
Time-series Matlab scripts
http://wise-obs.tau.ac.il/~eran/MATLAB/TimeseriesCon.html
Uvi_Wave Wavelet Toolbox Home Page
http://www.gts.tsc.uvigo.es/~wavelets/index.html
Another
Support Vector Machine (Top)
MATLAB Support Vector Machine Toolbox
Dr Gavin Cawley
School of Information Systems, University of East Anglia
http://theoval.sys.uea.ac.uk/~gcc/svm/toolbox/
LS-SVM - SISTA
SVM toolboxes
http://www.cs.wisc.edu/dmi/svm/
LSVM Lagrangian Support Vector Machine
http://www.cs.wisc.edu/dmi/lsvm/
Statistics (Top)
Logistic regression
http://www.spatial-econometrics.com/
SAGA
http://globec.whoi.edu/software/saga/
Multi-Parametric Toolbox (MPT) A tool (not only) for multi-parametric optimization.
http://control.ee.ethz.ch/~mpt/
ARfit: A Matlab package for the estimation of parameters and eigenmodes of multivariate autoregressive models
http://www.mat.univie.ac.at/~neum/software/arfit/
The Dimensional Analysis Toolbox for MATLAB
Home: http://www.sbrs.de/
Paper: http://www.isd.uni-stuttgart.de/~brueckner/Papers/similarity2002.pdf
FATHOM for Matlab
http://www.rsmas.miami.edu/personal/djones/
PLS-toolbox
http://www.eigenvector.com/
Multivariate analysis toolbox (N-way Toolbox - paper)
http://www.models.kvl.dk/source/nwaytoolbox/index.asp
Classification Toolbox for Matlab
http://tiger.technion.ac.il/~eladyt/classification/index.htm
Matlab toolbox for Robust Calibration
http://www.wis.kuleuven.ac.be/stat/robust/toolbox.html
Statistical Parametric Mapping
http://www.fil.ion.ucl.ac.uk/spm/spm2.html
EVIM: A Software Package for Extreme Value Analysis in Matlab
by Ramazan Gen?ay, Faruk Selcuk and Abdurrahman Ulugulyagci, 2001.
Manual (pdf file) evim.pdf - Software (zip file) evim.zip
Time Series Analysis
http://www.dpmi.tu-graz.ac.at/~schloegl/matlab/tsa/
Bayes Net Toolbox for Matlab
Written by Kevin Murphy
http://www.ai.mit.edu/~murphyk/Software/BNT/bnt.html
Other: http://www.isp.pitt.edu/information/toolboxes.html
ARfit: A Matlab package for the estimation of parameters and eigenmodes of multivariate autoregressive models
http://www.gps.caltech.edu/~tapio/arfit/
M-Fit
http://www.ill.fr/tas/matlab/doc/mfit4/mfit.html
Dimensional Analysis Toolbox for Matlab
http://www.sbrs.net/
The NaN-toolbox: A statistic-toolbox for Octave and Matlab?
... handles data with and without MISSING VALUES.
http://www-dpmi.tu-graz.ac.at/~schloegl/matlab/NaN/
Iterative Methods for Optimization: Matlab Codes
http://www4.ncsu.edu/~ctk/matlab_darts.html
Multiscale Shape Analysis (MSA) Matlab Toolbox 2000
http://www.vision.ime.usp.br/~cesar/projects/multiscale/
Multivariate Ecological & Oceanographic Data Analysis (FATHOM)
From David Jones
http://www.rsmas.miami.edu/personal/djones/
glmlab (Generalized Linear Models in MATLA
http://www.sci.usq.edu.au/staff/dunn/glmlab/glmlab.html
Spacial and Geometric Analysis (SaGA) toolbox
Interesting audio links with FAQ, VC++, on the topic