在尝试通过qsub提交一个在本地正常运行的Shell脚本到集群时，遇到了与`module`相关的语法错误和共享库加载失败的问题。错误提示显示找不到libOpenMS.so和libQtWebKit.so.4等库文件。这可能是因为qsub环境与直接运行环境的库路径设置不同。解决方案可能涉及在qsub命令中正确设置LD_LIBRARY_PATH或者确保集群环境中包含必要的库文件。
我有以下
shellscript：
#!/bin/sh
cd /sw/local/bin/
export LD_LIBRARY_PATH=/sw/local/lib:/usr/local/Trolltech/Qt-4.7.2/lib:$LD_LIBRARY_PATH
./FeatureFinderRaw -in /homes/JG-C1-18.mzML -out /homes/test_remove_after_use.featureXML -threads 20
当我从自己的命令行运行它时,它工作正常,但是当我尝试做：
qsub -q ningal.q -cwd -V -o /homes/queue.out -e /queue.err featureFind_C1-18_20t.sh
我收到以下错误：
/bin/sh: module: line 1: Syntax error: unexpected end of file
/bin/sh: error importing function definition for `module'
./FeatureFinderRaw: error while loading shared libraries: libOpenMS.so: cannot open shared object file: No such file or directory
/bin/sh: module: line 1: Syntax error: unexpected end of file
/bin/sh: error importing function definition for `module'
./FeatureFinderRaw: error while loading shared libraries: libQtWebKit.so.4: cannot open shared object file: No such file or directory
/bin/sh: module: line 1: Syntax error: unexpected end of file
/bin/sh: error importing function definition for `module'
./FeatureFinderRaw: error while loading shared libraries: libQtWebKit.so.4: cannot open shared object file: No such file or directory
/bin/bash: module: line 1: Syntax error: unexpected end of file
/bin/bash: error importing function definition for `module'
./FeatureFinderRaw: error while loading shared libraries: libQtWebKit.so.4: cannot open shared object file: No such file or directory
/bin/sh: module: line 1: Syntax error: unexpected end of file
/bin/sh: error importing function definition for `module'
./FeatureFinderRaw: error while loading shared libraries: libQtWebKit.so.4: cannot open shared object file: No such file or directory
/bin/sh: module: line 1: Syntax error: unexpected end of file
/bin/sh: error importing function definition for `module'
我不明白为什么在使用qsub时会收到此错误,但是在直接在同一个集群机器上运行脚本时却并不明白.如何使用qsub运行脚本？
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