yum安装gcc_生信平台搭建（四）：利用yum进行基础环境配置

​配置完epel源，其实就可以开始进行配置了。由于生物软件开发环境千差万别，因此需要多种依赖，例如gcc，java，zlib，glibc，compat等等，这些我们可以提前配置好。否则在编译软件的时候，经常就会报错，提起XXX can not find，libXXX缺少等。这些都可以利用yum解决。yum最大的好处就是解决了依赖问题。yum会将软件安装到固定位置，因此，只能使用管理员账户进行操作。

利用yum进行基础环境配置

以下内容是生物软件常用的一些基础内容，配置之后可以解决大部分软件依赖问题，但是并不是全部。可以一条条运行这些安装。也可以将这些内容粘贴到一个脚本文件中，例如yum.sh，然后sh yum运行。

yum install -y --skip-broken gcc* 
yum install -y --skip-broken zlib* 
yum install -y --skip-broken glibc* 
yum install -y --skip-broken compat* 
yum install -y --skip-broken boost* 
yum install -y pip* 
yum install -y  git 
yum install -y  tree 
yum install -y  htop 
yum install -y python2-pip.noarch python34-pip.noarch
yum install -y cmake3.x86_64 cmake.x86_64
yum install -y python-ipython.noarch
yum install -y boost.i686 boost.x86_64 boost-devel.i686 boost-devel.x86_64
yum install -y glibc.i686 glibc.x86_64 glibc-devel.i686 glibc-devel.x86_64
yum install -y perl-Params-Validate.x86_64
yum install -y ncurses-devel.i686 ncurses-devel.x86_64 
yum install -y root.x86_64
yum install -y libcurl-devel.i686 libcurl-devel.x86_64 libcurl.i686 libcurl.x86_64
yum install -y zlib.i686 zlib.x86_64 zlib-devel.i686 zlib-devel.x86_64
yum install -y --skip-broken compat*
yum install -y ImageMagick.i686 ImageMagick.x86_64 ImageMagick-devel.i686 ImageMagick-devel.x86_64
yum install -y libXScrnSaver.i686 libXScrnSaver.x86_64
yum  install -y argtable.x86_64  argtable-devel.x86_64
yum install -y tree.x86_64
 yum install -y openssl-devel
yum install -y libstdc++.i686 libstdc++.x86_64 libstdc++-devel.i686 libstdc++-devel.x86_64 libstdc++-static.i686 libstdc++-static.x86_64 compat-libstdc++-33.i686 compat-libstdc++-33.x86_64
yum install -y tbb-devel.x86_64
yum install -y gsl-devel.i686   gsl-devel.x86_64 gsl.i686 gsl.x86_64
yum install -y perl-Sys-SigAction.noarch
yum install -y build-essentials
yum install -y swig-doc.noarch
yum install -y swig.x86_64
yum install -y libcurl-devel.i686
yum install -y libcurl-devel.x86_64
yum install -y libcurl.i686
yum install -y libcurl.x86_64
yum install -y glibc-devel.i686
yum install -y glibc-devel.x86_64
yum install -y libXtst-devel.i686
yum install -y libXtst-devel.x86_64
yum install -y openssl-devel.i686
yum install -y openssl-devel.x86_64
yum install -y xmlsec1-openssl-devel.i686
yum install -y xmlsec1-openssl-devel.x86_64
yum install -y gcc-x86_64-linux-gnu.x86_64
yum install -y gcc-xtensa-linux-gnu.x86_64
yum install -y gcc-c++-x86_64-linux-gnu.x86_64
yum install -y gcc-c++.x86_64
yum install -y libquadmath.i686
yum install -y libquadmath.x86_64
yum install -y libquadmath-devel.i686
yum install -y libquadmath-devel.x86_64
yum install -y mingw32-gcc-c++.x86_64
yum install -y mingw32-gcc-gfortran.x86_64
yum install -y mingw32-gcc-objc.x86_64
yum install -y mingw32-gcc-objc++.x86_64
yum install -y mingw64-gcc-objc.x86_64
yum install -y mingw64-gcc-objc++.x86_64
yum install -y glibc-static
yum install -y libstdc++-static
yum install -y udunits2-devel
yum install -y  enca.x86_64
yum install -y libxml2-devel.i686 libxml2-devel.x86_64

这些内容可能有重复部分，但是不要紧，yum会自动去判断，如果已经安装了就跳过，没有安装的继续安装。

如何解决报错

后面如果在安装生物软件的时候，提示缺少某个库，如何解决呢？例如：

configure: error: Could not find argtable2.h. Try $ ./configure CFLAGS='-Iyour-argtable2-include-path

将错误信息复制到google后者bing中，找到问题解决方案，提示需要安装argtable，首先利用yum进行搜索，然后安装，在重新编译软件就行了，so easy。

yum search argtable
yum  install -y argtable.x86_64  argtable-devel.x86_64