html vr播放器,vr.html · 鸟茫然/oxdna-viewer - Gitee.com



oxDNA three.js viewer

Key	Action
p	Save image
s	Toggle selection mode
d	Toggle dragging mode
Right arrow	Next configuration
Left arrow	Previous configuration
ctrl/⌘-s	Save topology and configuration
ctrl/⌘-z	Undo edit
ctrl/⌘-shift-z (or ctrl/⌘-y)	Redo edit
ctrl/⌘-a	Select all elements
ctrl/⌘-i	Invert selection
ctrl/⌘-click	Select multiple elements
shift-click	Select intermediate monomers
Numpad1	Move camera to x-axis (ctrl/⌘ to invert)
Numpad2	Rotate camera down
Numpad3	Move camera to y-axis (ctrl/⌘ to invert)
Numpad4	Rotate camera left
Numpad5	Reset camera
Numpad6	Rotate camera right
Numpad7	Move camera to z-axis (ctrl/⌘ to invert)
Numpad8	Rotate camera up
F1	Show this list

Save the current stucture to oxDNA configuration and/or topology files

Topology

Configuration

File name:

Cancel

Download Files

The viewer supports scene export in the common 3D printing STL format. For memory reasons one has the option to include just parts of the oxDNA model into the output mesh file, choosing from:

Backbone mesh

Nucleoside mesh

Connector mesh

Backbone connector mesh

By increasing the scaling of the model objects can be made to overlap, which is benefitial for sturdy printed models.

scale:

The smoothness of the exported model is controlled via the faces multiplier setting. Note that additional smoothness results in very large STL files which not every browser can handle.

faces multiplier:

File name:

Cancel

Download Files

Drag and drop oxDNA .conf and .top files below

Keyboard shortcuts

File

Download oxView file

Download oxDNA Files

STL Export

Download sequences

Download pair trap file

Create Video

Select

Enable selection

Selection mode:

Monomer

Strand

System

Cluster

title="Clustering options" style="font-size: 1.5em; vertical-align: middle">tune

Box

Select pairs

Selected Bases List

Show selected base info

Download selected base list

Download selected base trap file

Edit

undo

redo

Mouse transformation

None

Translate

Rotate

Rotate

Axis:

X

Y

Z
Rotation angle:

Rotate

Edit Topology

Nick

Delete

Ligate

Sequence:

Set sequence

Set compl

Extend

Create

Rigid cluster dynamics

PBC / Centering

PBC:

Monomer

Strand

None

Centering:

Origin

Box Center

None

Apply

Select

Transform

Selection mode:

Monomer

Strand

System

Cluster

title="Clustering options" style="font-size: 1.5em; vertical-align: middle">tune

Box

Select pairs

Rotate:

Axis:

X

Y

Z
Rotation angle:

Rotate

Edit Topology

Nick

Delete

Ligate

Sequence:

Set sequence

Set compl

Extend

Create

Rigid cluster dynamics

View

Display Arrows

Display Box

Color by:

Strand

Cluster

System

Overlay

Toggle Background Color

Edit

Colors

Reset Camera

Orthographic

Fog

System hierarchy

Trajectory

skip_previous

skip_next

fast_rewind until t ≤

fast_forward until t ≥

hide toolbar

close

Video type:

Trajectory

XY lemniscate

File format:

webm (Chrome only!)

gif

png

jpg

Framerate:

fps

Duration:

s

Start

close

Click a color to edit, right click to remove:

close

close

Automatic

Min points:

Max dist (ε):

Start clustering

Manual

Selection to

cluster

Clear clusters

close

Near:

Far:

Toggle fog

close

Selected Base Info:

• Undo (ctrl/⌘+Z)
• Redo (ctrl/⌘+Y)

  ---

• Delete (del)
• Cut (ctrl/⌘+X)
• Copy (ctrl/⌘+C)
• Paste (ctrl/⌘+V)

  ---

• Select all (ctrl/⌘+A)
• Invert selection (ctrl/⌘+I)
• Clear selection

一键复制

编辑

Web IDE

原始数据

按行查看

历史