差异表达基因热图怎么看_画图专题 | 热图函数pheatmap()

画图专题 | 热图函数pheatamp()

百迈客医学 2018-10-31

先看一眼这个函数的参数，这么多，而且最后还有省略号。那么我们应该怎么合理使用这些参数让你的热图看起来更加高大上呢？

pheatmap(mat, color = colorRampPalette(rev(brewer.pal(n = 7, name =

  "RdYlBu")))(100), kmeans_k = NA, breaks = NA, border_color = "grey60",

  cellwidth = NA, cellheight = NA, scale = "none", cluster_rows = TRUE,

  cluster_cols = TRUE, clustering_distance_rows = "euclidean",

  clustering_distance_cols = "euclidean", clustering_method = "complete",

  clustering_callback = identity2, cutree_rows = NA, cutree_cols = NA,

  treeheight_row = ifelse((class(cluster_rows) == "hclust") || cluster_rows,

  50, 0), treeheight_col = ifelse((class(cluster_cols) == "hclust") ||

  cluster_cols, 50, 0), legend = TRUE, legend_breaks = NA,

  legend_labels = NA, annotation_row = NA, annotation_col = NA,

  annotation = NA, annotation_colors = NA, annotation_legend = TRUE,

  annotation_names_row = TRUE, annotation_names_col = TRUE,

  drop_levels = TRUE, show_rownames = T, show_colnames = T, main = NA,

  fontsize = 10, fontsize_row = fontsize, fontsize_col = fontsize,

  display_numbers = F, number_format = "%.2f", number_color = "grey30",

  fontsize_number = 0.8 * fontsize, gaps_row = NULL, gaps_col = NULL,

  labels_row = NULL, labels_col = NULL, filename = NA, width = NA,

  height = NA, silent = FALSE, na_col = "#DDDDDD", ...)

1、数据准备

#用来画热图的数据