__author__ = 'xin yang'
import os
import nibabel as nib
import numpy as np
import math
src_us_folder = 'G:/Temp/Data/src/us'
src_seg_folder = 'G:/Temp/Data/src/seg'
aug_us_folder = 'G:/Temp/Data/aug/us'
aug_seg_folder = 'G:/Temp/Data/aug/seg'
img_n= 10
rotate_theta = np.array([0, math.pi/2])
# augmentation
aug_cnt = 0
for k in range(img_n):
src_us_file = os.path.join(src_us_folder, (str(k) + '.nii'))
src_seg_file = os.path.join(src_seg_folder, (str(k) + '_seg.nii'))
# load .nii files
src_us_vol = nib.load(src_us_file)
src_seg_vol = nib.load(src_seg_file)
# volume data
us_vol_data = src_us_vol.get_data()
us_vol_data = (np.array(us_vol_data)).astype('uint8')
seg_vol_data = src_seg_vol.get_data()
seg_vol_data = (np.array(seg_vol_data)).astype('uint8')
# get refer
[Python] Python 旋转、flip Nifti三维数据 (Python Rotate and Flip Nifti volume)
最新推荐文章于 2022-11-07 13:24:13 发布
本文介绍了使用NiBabel库在Python中旋转和翻转Nifti三维数据的方法。需要注意的是,这种变换仅改变头部的仿射矩阵信息,实际数据不受影响。在ITK-Snap加载.nii文件时,会根据仿射矩阵进行转换。然而,这种变换在Matlab的Nifti工具箱中无法识别,会导致错误提示。为解决此问题,需要按照仿射矩阵真正地重新切片体积数据。
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