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基因数据处理39之mango安装记录

标签: mango
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更多代码请见:https://github.com/xubo245/AdamLearning

1解释
mango安装记录
mango主要是在adam上实现 可视化平台
A scalable genome browser

2.代码:

git clone https://github.com/bigdatagenomics/mango.git
cd mango
mvn clean package -DskipTests

需要设置maven的jvm 的内存,之前博文有写

3.结果:

/mango-cli/0.0.1-SNAPSHOT/mango-cli-0.0.1-SNAPSHOT.jar
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] mango: an ADAM-based genomics visualization toolkit  SUCCESS [  5.115 s]
[INFO] mango-core: an ADAM-based genomics visualization toolkit SUCCESS [01:10 min]
[INFO] mango-cli: an ADAM-based genomics visualization toolkit SUCCESS [54:22 min]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 55:38 min
[INFO] Finished at: 2016-05-29T22:47:18+08:00
[INFO] Final Memory: 33M/694M
[INFO] ------------------------------------------------------------------------

参考
【1】https://github.com/bigdatagenomics
【2】https://github.com/bigdatagenomics/mango
【3】https://github.com/xubo245/AdamLearning

编译成功记录:

hadoop@Master:~/xubo/tools/mango$ mvn clean package -DskipTests 
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] mango: an ADAM-based genomics visualization toolkit
[INFO] mango-core: an ADAM-based genomics visualization toolkit
[INFO] mango-cli: an ADAM-based genomics visualization toolkit
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building mango: an ADAM-based genomics visualization toolkit 0.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ mango-parent ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ mango-parent ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default) @ mango-parent ---
[INFO] Modified 0 of 26 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.1.5:compile (scala-compile-first) @ mango-parent ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.1.5:testCompile (scala-test-compile-first) @ mango-parent ---
[INFO] No sources to compile
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building mango-core: an ADAM-based genomics visualization toolkit 0.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ mango-core ---
[INFO] Deleting /home/hadoop/xubo/tools/mango/mango-core/target
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ mango-core ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default) @ mango-core ---
[INFO] Modified 0 of 23 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ mango-core ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/hadoop/xubo/tools/mango/mango-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.1.5:compile (scala-compile-first) @ mango-core ---
[WARNING]  Expected all dependencies to require Scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-misc_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-misc_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-metrics_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-io_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-cli_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  com.github.erictu:spark-intervalrdd_2.10:0.1-SNAPSHOT requires scala version: 2.10.4
[WARNING]  org.bdgenomics.adam:adam-core_2.10:0.19.1-SNAPSHOT requires scala version: 2.10.4
[WARNING]  com.github.erictu:interval-tree_2.10:0.1-SNAPSHOT requires scala version: 2.10.4
[WARNING]  org.scoverage:scalac-scoverage-plugin_2.10:1.1.1 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.adam:adam-core_2.10:0.19.1-20160518.141928-1073 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.adam:adam-apis_2.10:0.19.1-SNAPSHOT requires scala version: 2.10.4
[WARNING]  org.bdgenomics.adam:adam-cli_2.10:0.19.1-20160518.142039-818 requires scala version: 2.10.4
[WARNING]  net.codingwell:scala-guice_2.10:4.0.0 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.adam:adam-core_2.10:0.19.1-20160518.141928-1073 requires scala version: 2.10.4
[WARNING]  com.twitter:chill_2.10:0.5.0 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-remote_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-actor_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-slf4j_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  org.apache.spark:spark-core_2.10:1.5.2 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-jackson_2.10:3.2.10 requires scala version: 2.10.0
[WARNING] Multiple versions of scala libraries detected!
[WARNING] Zinc server is not available at port 3030 - reverting to normal incremental compile
[INFO] Using incremental compilation
[INFO] Compiling 16 Scala sources to /home/hadoop/xubo/tools/mango/mango-core/target/scala-2.10.4/classes...
[WARNING] /home/hadoop/xubo/tools/mango/mango-core/src/main/scala/org/bdgenomics/mango/filters/AlignmentRecordFilter.scala:28: This catches all Throwables. If this is really intended, use `case _ : Throwable` to clear this warning.
[WARNING]     val minimumQuality: Double = try { quality.toDouble } catch { case _ => 0 }
[WARNING]                                                                        ^
[WARNING] one warning found
[INFO] 
[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ mango-core ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ mango-core ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 5 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.1.5:testCompile (scala-test-compile-first) @ mango-core ---
[WARNING]  Expected all dependencies to require Scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-misc_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-misc_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-metrics_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-io_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-cli_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  com.github.erictu:spark-intervalrdd_2.10:0.1-SNAPSHOT requires scala version: 2.10.4
[WARNING]  org.bdgenomics.adam:adam-core_2.10:0.19.1-SNAPSHOT requires scala version: 2.10.4
[WARNING]  com.github.erictu:interval-tree_2.10:0.1-SNAPSHOT requires scala version: 2.10.4
[WARNING]  org.scoverage:scalac-scoverage-plugin_2.10:1.1.1 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.adam:adam-core_2.10:0.19.1-20160518.141928-1073 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.adam:adam-apis_2.10:0.19.1-SNAPSHOT requires scala version: 2.10.4
[WARNING]  org.bdgenomics.adam:adam-cli_2.10:0.19.1-20160518.142039-818 requires scala version: 2.10.4
[WARNING]  net.codingwell:scala-guice_2.10:4.0.0 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.adam:adam-core_2.10:0.19.1-20160518.141928-1073 requires scala version: 2.10.4
[WARNING]  com.twitter:chill_2.10:0.5.0 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-remote_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-actor_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-slf4j_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  org.apache.spark:spark-core_2.10:1.5.2 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-jackson_2.10:3.2.10 requires scala version: 2.10.0
[WARNING] Multiple versions of scala libraries detected!
[WARNING] Zinc server is not available at port 3030 - reverting to normal incremental compile
[INFO] Using incremental compilation
[INFO] Compiling 7 Scala sources to /home/hadoop/xubo/tools/mango/mango-core/target/scala-2.10.4/test-classes...
[INFO] 
[INFO] --- maven-compiler-plugin:3.1:testCompile (default-testCompile) @ mango-core ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:2.7:test (default-test) @ mango-core ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:1.0-RC2:test (test) @ mango-core ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ mango-core ---
[INFO] Building jar: /home/hadoop/xubo/tools/mango/mango-core/target/mango-core-0.0.1-SNAPSHOT.jar
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building mango-cli: an ADAM-based genomics visualization toolkit 0.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
Downloading: http://repo1.maven.org/maven2/org/scalaz/scalaz-core_2.10/7.1.4/scalaz-core_2.10-7.1.4.jar
Downloaded: http://repo1.maven.org/maven2/org/scalaz/scalaz-core_2.10/7.1.4/scalaz-core_2.10-7.1.4.jar (9558 KB at 3.0 KB/sec)
[INFO] 
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ mango-cli ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ mango-cli ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default) @ mango-cli ---
[INFO] Modified 0 of 3 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ mango-cli ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/hadoop/xubo/tools/mango/mango-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.1.5:compile (scala-compile-first) @ mango-cli ---
[WARNING]  Expected all dependencies to require Scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-misc_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-misc_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-metrics_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-io_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-cli_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  com.github.erictu:spark-intervalrdd_2.10:0.1-SNAPSHOT requires scala version: 2.10.4
[WARNING]  org.bdgenomics.adam:adam-core_2.10:0.19.1-SNAPSHOT requires scala version: 2.10.4
[WARNING]  com.github.erictu:interval-tree_2.10:0.1-SNAPSHOT requires scala version: 2.10.4
[WARNING]  org.scoverage:scalac-scoverage-plugin_2.10:1.1.1 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.adam:adam-core_2.10:0.19.1-20160518.141928-1073 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.adam:adam-apis_2.10:0.19.1-SNAPSHOT requires scala version: 2.10.4
[WARNING]  org.bdgenomics.adam:adam-cli_2.10:0.19.1-20160518.142039-818 requires scala version: 2.10.4
[WARNING]  net.codingwell:scala-guice_2.10:4.0.0 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.adam:adam-core_2.10:0.19.1-20160518.141928-1073 requires scala version: 2.10.4
[WARNING]  com.twitter:chill_2.10:0.5.0 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-remote_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-actor_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-slf4j_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  org.apache.spark:spark-core_2.10:1.5.2 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-jackson_2.10:3.2.10 requires scala version: 2.10.0
[WARNING] Multiple versions of scala libraries detected!
[WARNING] Zinc server is not available at port 3030 - reverting to normal incremental compile
[INFO] Using incremental compilation
[INFO] Compiling 1 Scala source to /home/hadoop/xubo/tools/mango/mango-cli/target/scala-2.10.4/classes...
[INFO] 
[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ mango-cli ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ mango-cli ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 6 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.1.5:testCompile (scala-test-compile-first) @ mango-cli ---
[WARNING]  Expected all dependencies to require Scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-misc_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-misc_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-metrics_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-io_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-cli_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  com.github.erictu:spark-intervalrdd_2.10:0.1-SNAPSHOT requires scala version: 2.10.4
[WARNING]  org.bdgenomics.adam:adam-core_2.10:0.19.1-SNAPSHOT requires scala version: 2.10.4
[WARNING]  com.github.erictu:interval-tree_2.10:0.1-SNAPSHOT requires scala version: 2.10.4
[WARNING]  org.scoverage:scalac-scoverage-plugin_2.10:1.1.1 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.adam:adam-core_2.10:0.19.1-20160518.141928-1073 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.adam:adam-apis_2.10:0.19.1-SNAPSHOT requires scala version: 2.10.4
[WARNING]  org.bdgenomics.adam:adam-cli_2.10:0.19.1-20160518.142039-818 requires scala version: 2.10.4
[WARNING]  net.codingwell:scala-guice_2.10:4.0.0 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.adam:adam-core_2.10:0.19.1-20160518.141928-1073 requires scala version: 2.10.4
[WARNING]  com.twitter:chill_2.10:0.5.0 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-remote_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-actor_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-slf4j_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  org.apache.spark:spark-core_2.10:1.5.2 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-jackson_2.10:3.2.10 requires scala version: 2.10.0
[WARNING] Multiple versions of scala libraries detected!
[WARNING] Zinc server is not available at port 3030 - reverting to normal incremental compile
[INFO] Using incremental compilation
[INFO] Compiling 2 Scala sources to /home/hadoop/xubo/tools/mango/mango-cli/target/scala-2.10.4/test-classes...
[INFO] 
[INFO] --- maven-compiler-plugin:3.1:testCompile (default-testCompile) @ mango-cli ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:2.7:test (default-test) @ mango-cli ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:1.0-RC2:test (test) @ mango-cli ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ mango-cli ---
[INFO] Building jar: /home/hadoop/xubo/tools/mango/mango-cli/target/mango-cli-0.0.1-SNAPSHOT.jar
[INFO] 
[INFO] --- appassembler-maven-plugin:1.8:assemble (default) @ mango-cli ---
[INFO] Installing artifact /home/hadoop/.m2/repository/com/esotericsoftware/kryo/kryo/2.21/kryo-2.21.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/esotericsoftware/kryo/kryo/2.21/kryo-2.21.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/esotericsoftware/reflectasm/reflectasm/1.07/reflectasm-1.07-shaded.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/esotericsoftware/reflectasm/reflectasm/1.07/reflectasm-1.07-shaded.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/ow2/asm/asm/4.0/asm-4.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/ow2/asm/asm/4.0/asm-4.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/esotericsoftware/minlog/minlog/1.2/minlog-1.2.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/esotericsoftware/minlog/minlog/1.2/minlog-1.2.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/objenesis/objenesis/1.2/objenesis-1.2.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/objenesis/objenesis/1.2/objenesis-1.2.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/it/unimi/dsi/fastutil/6.4.4/fastutil-6.4.4.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/it/unimi/dsi/fastutil/6.4.4/fastutil-6.4.4.jar
[INFO] Installing artifact /home/hadoop/xubo/tools/mango/mango-core/target/mango-core-0.0.1-SNAPSHOT.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/bdgenomics/mango/mango-core/0.0.1-SNAPSHOT/mango-core-0.0.1-SNAPSHOT.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/eclipse/jetty/jetty-server/9.2.14.v20151106/jetty-server-9.2.14.v20151106.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/eclipse/jetty/jetty-server/9.2.14.v20151106/jetty-server-9.2.14.v20151106.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/javax/servlet/javax.servlet-api/3.1.0/javax.servlet-api-3.1.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/javax/servlet/javax.servlet-api/3.1.0/javax.servlet-api-3.1.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/eclipse/jetty/jetty-http/9.2.14.v20151106/jetty-http-9.2.14.v20151106.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/eclipse/jetty/jetty-http/9.2.14.v20151106/jetty-http-9.2.14.v20151106.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/eclipse/jetty/jetty-util/9.2.14.v20151106/jetty-util-9.2.14.v20151106.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/eclipse/jetty/jetty-util/9.2.14.v20151106/jetty-util-9.2.14.v20151106.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/eclipse/jetty/jetty-io/9.2.14.v20151106/jetty-io-9.2.14.v20151106.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/eclipse/jetty/jetty-io/9.2.14.v20151106/jetty-io-9.2.14.v20151106.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/eclipse/jetty/jetty-webapp/9.2.14.v20151106/jetty-webapp-9.2.14.v20151106.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/eclipse/jetty/jetty-webapp/9.2.14.v20151106/jetty-webapp-9.2.14.v20151106.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/eclipse/jetty/jetty-xml/9.2.14.v20151106/jetty-xml-9.2.14.v20151106.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/eclipse/jetty/jetty-xml/9.2.14.v20151106/jetty-xml-9.2.14.v20151106.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/eclipse/jetty/jetty-servlet/9.2.14.v20151106/jetty-servlet-9.2.14.v20151106.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/eclipse/jetty/jetty-servlet/9.2.14.v20151106/jetty-servlet-9.2.14.v20151106.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/eclipse/jetty/jetty-security/9.2.14.v20151106/jetty-security-9.2.14.v20151106.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/eclipse/jetty/jetty-security/9.2.14.v20151106/jetty-security-9.2.14.v20151106.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/bdgenomics/bdg-formats/bdg-formats/0.7.1/bdg-formats-0.7.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/bdgenomics/bdg-formats/bdg-formats/0.7.1/bdg-formats-0.7.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/github/broadinstitute/picard/1.141/picard-1.141.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/github/broadinstitute/picard/1.141/picard-1.141.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/google/cloud/genomics/gatk-tools-java/1.1/gatk-tools-java-1.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/google/cloud/genomics/gatk-tools-java/1.1/gatk-tools-java-1.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/google/api-client/google-api-client/1.19.0/google-api-client-1.19.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/google/api-client/google-api-client/1.19.0/google-api-client-1.19.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/google/oauth-client/google-oauth-client/1.19.0/google-oauth-client-1.19.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/google/oauth-client/google-oauth-client/1.19.0/google-oauth-client-1.19.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/google/oauth-client/google-oauth-client-jetty/1.19.0/google-oauth-client-jetty-1.19.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/google/oauth-client/google-oauth-client-jetty/1.19.0/google-oauth-client-jetty-1.19.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/google/oauth-client/google-oauth-client-java6/1.19.0/google-oauth-client-java6-1.19.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/google/oauth-client/google-oauth-client-java6/1.19.0/google-oauth-client-java6-1.19.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/google/http-client/google-http-client/1.19.0/google-http-client-1.19.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/google/http-client/google-http-client/1.19.0/google-http-client-1.19.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/google/http-client/google-http-client-jackson2/1.19.0/google-http-client-jackson2-1.19.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/google/http-client/google-http-client-jackson2/1.19.0/google-http-client-jackson2-1.19.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/google/apis/google-api-services-genomics/v1beta2-rev9-1.19.0/google-api-services-genomics-v1beta2-rev9-1.19.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/google/apis/google-api-services-genomics/v1beta2-rev9-1.19.0/google-api-services-genomics-v1beta2-rev9-1.19.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/google/cloud/genomics/google-genomics-utils/v1beta2-0.19/google-genomics-utils-v1beta2-0.19.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/google/cloud/genomics/google-genomics-utils/v1beta2-0.19/google-genomics-utils-v1beta2-0.19.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/google/api-client/google-api-client-java6/1.19.0/google-api-client-java6-1.19.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/google/api-client/google-api-client-java6/1.19.0/google-api-client-java6-1.19.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/gov/nist/math/jama/gov.nist.math.jama/1.1.1/gov.nist.math.jama-1.1.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/gov/nist/math/jama/gov.nist.math.jama/1.1.1/gov.nist.math.jama-1.1.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/reflections/reflections/0.9.9/reflections-0.9.9.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/reflections/reflections/0.9.9/reflections-0.9.9.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/javassist/javassist/3.18.2-GA/javassist-3.18.2-GA.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/javassist/javassist/3.18.2-GA/javassist-3.18.2-GA.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/mortbay/jetty/jetty/6.1.26/jetty-6.1.26.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/mortbay/jetty/jetty/6.1.26/jetty-6.1.26.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/beust/jcommander/1.35/jcommander-1.35.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/beust/jcommander/1.35/jcommander-1.35.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/spark/spark-sql_2.10/1.5.2/spark-sql_2.10-1.5.2.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/spark/spark-sql_2.10/1.5.2/spark-sql_2.10-1.5.2.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/spark/spark-catalyst_2.10/1.5.2/spark-catalyst_2.10-1.5.2.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/spark/spark-catalyst_2.10/1.5.2/spark-catalyst_2.10-1.5.2.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/codehaus/janino/janino/2.7.8/janino-2.7.8.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/codehaus/janino/janino/2.7.8/janino-2.7.8.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/codehaus/janino/commons-compiler/2.7.8/commons-compiler-2.7.8.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/codehaus/janino/commons-compiler/2.7.8/commons-compiler-2.7.8.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/scala-lang/scala-library/2.10.4/scala-library-2.10.4.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/scala-lang/scala-library/2.10.4/scala-library-2.10.4.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/bdgenomics/utils/utils-metrics_2.10/0.2.4/utils-metrics_2.10-0.2.4.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/bdgenomics/utils/utils-metrics_2.10/0.2.4/utils-metrics_2.10-0.2.4.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/bdgenomics/utils/utils-misc_2.10/0.2.4/utils-misc_2.10-0.2.4.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/bdgenomics/utils/utils-misc_2.10/0.2.4/utils-misc_2.10-0.2.4.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/netflix/servo/servo-core/0.5.5/servo-core-0.5.5.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/netflix/servo/servo-core/0.5.5/servo-core-0.5.5.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/google/code/findbugs/annotations/2.0.0/annotations-2.0.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/google/code/findbugs/annotations/2.0.0/annotations-2.0.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/bdgenomics/utils/utils-io_2.10/0.2.4/utils-io_2.10-0.2.4.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/bdgenomics/utils/utils-io_2.10/0.2.4/utils-io_2.10-0.2.4.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/httpcomponents/httpclient/4.3.2/httpclient-4.3.2.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/httpcomponents/httpclient/4.3.2/httpclient-4.3.2.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/httpcomponents/httpcore/4.3.1/httpcore-4.3.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/httpcomponents/httpcore/4.3.1/httpcore-4.3.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/commons-codec/commons-codec/1.6/commons-codec-1.6.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/commons-codec/commons-codec/1.6/commons-codec-1.6.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/bdgenomics/utils/utils-cli_2.10/0.2.4/utils-cli_2.10-0.2.4.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/bdgenomics/utils/utils-cli_2.10/0.2.4/utils-cli_2.10-0.2.4.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/args4j/args4j/2.0.23/args4j-2.0.23.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/args4j/args4j/2.0.23/args4j-2.0.23.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/hadoop/hadoop-client/2.6.0/hadoop-client-2.6.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/hadoop/hadoop-client/2.6.0/hadoop-client-2.6.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/hadoop/hadoop-common/2.6.0/hadoop-common-2.6.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/hadoop/hadoop-common/2.6.0/hadoop-common-2.6.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/xmlenc/xmlenc/0.52/xmlenc-0.52.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/xmlenc/xmlenc/0.52/xmlenc-0.52.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/commons-collections/commons-collections/3.2.1/commons-collections-3.2.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/commons-collections/commons-collections/3.2.1/commons-collections-3.2.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/commons-lang/commons-lang/2.6/commons-lang-2.6.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/commons-configuration/commons-configuration/1.10/commons-configuration-1.10.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/commons-configuration/commons-configuration/1.10/commons-configuration-1.10.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/google/protobuf/protobuf-java/2.5.0/protobuf-java-2.5.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/google/protobuf/protobuf-java/2.5.0/protobuf-java-2.5.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/google/code/gson/gson/2.2.4/gson-2.2.4.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/google/code/gson/gson/2.2.4/gson-2.2.4.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/hadoop/hadoop-auth/2.6.0/hadoop-auth-2.6.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/hadoop/hadoop-auth/2.6.0/hadoop-auth-2.6.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/directory/server/apacheds-kerberos-codec/2.0.0-M15/apacheds-kerberos-codec-2.0.0-M15.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/directory/server/apacheds-kerberos-codec/2.0.0-M15/apacheds-kerberos-codec-2.0.0-M15.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/directory/server/apacheds-i18n/2.0.0-M15/apacheds-i18n-2.0.0-M15.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/directory/server/apacheds-i18n/2.0.0-M15/apacheds-i18n-2.0.0-M15.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/directory/api/api-asn1-api/1.0.0-M20/api-asn1-api-1.0.0-M20.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/directory/api/api-asn1-api/1.0.0-M20/api-asn1-api-1.0.0-M20.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/directory/api/api-util/1.0.0-M20/api-util-1.0.0-M20.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/directory/api/api-util/1.0.0-M20/api-util-1.0.0-M20.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/curator/curator-client/2.6.0/curator-client-2.6.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/curator/curator-client/2.6.0/curator-client-2.6.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/htrace/htrace-core/3.0.4/htrace-core-3.0.4.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/htrace/htrace-core/3.0.4/htrace-core-3.0.4.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/zookeeper/zookeeper/3.4.6/zookeeper-3.4.6.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/zookeeper/zookeeper/3.4.6/zookeeper-3.4.6.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/hadoop/hadoop-hdfs/2.6.0/hadoop-hdfs-2.6.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/hadoop/hadoop-hdfs/2.6.0/hadoop-hdfs-2.6.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/mortbay/jetty/jetty-util/6.1.26/jetty-util-6.1.26.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/mortbay/jetty/jetty-util/6.1.26/jetty-util-6.1.26.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/io/netty/netty/3.6.2.Final/netty-3.6.2.Final.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/io/netty/netty/3.6.2.Final/netty-3.6.2.Final.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/xerces/xercesImpl/2.9.1/xercesImpl-2.9.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/xerces/xercesImpl/2.9.1/xercesImpl-2.9.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/xml-apis/xml-apis/1.3.04/xml-apis-1.3.04.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/xml-apis/xml-apis/1.3.04/xml-apis-1.3.04.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/hadoop/hadoop-mapreduce-client-app/2.6.0/hadoop-mapreduce-client-app-2.6.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/hadoop/hadoop-mapreduce-client-app/2.6.0/hadoop-mapreduce-client-app-2.6.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/hadoop/hadoop-mapreduce-client-common/2.6.0/hadoop-mapreduce-client-common-2.6.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/hadoop/hadoop-mapreduce-client-common/2.6.0/hadoop-mapreduce-client-common-2.6.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/hadoop/hadoop-yarn-client/2.6.0/hadoop-yarn-client-2.6.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/hadoop/hadoop-yarn-client/2.6.0/hadoop-yarn-client-2.6.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/hadoop/hadoop-yarn-server-common/2.6.0/hadoop-yarn-server-common-2.6.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/hadoop/hadoop-yarn-server-common/2.6.0/hadoop-yarn-server-common-2.6.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/hadoop/hadoop-mapreduce-client-shuffle/2.6.0/hadoop-mapreduce-client-shuffle-2.6.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/hadoop/hadoop-mapreduce-client-shuffle/2.6.0/hadoop-mapreduce-client-shuffle-2.6.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/fusesource/leveldbjni/leveldbjni-all/1.8/leveldbjni-all-1.8.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/fusesource/leveldbjni/leveldbjni-all/1.8/leveldbjni-all-1.8.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/hadoop/hadoop-yarn-api/2.6.0/hadoop-yarn-api-2.6.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/hadoop/hadoop-yarn-api/2.6.0/hadoop-yarn-api-2.6.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/hadoop/hadoop-mapreduce-client-core/2.6.0/hadoop-mapreduce-client-core-2.6.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/hadoop/hadoop-mapreduce-client-core/2.6.0/hadoop-mapreduce-client-core-2.6.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/hadoop/hadoop-yarn-common/2.6.0/hadoop-yarn-common-2.6.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/hadoop/hadoop-yarn-common/2.6.0/hadoop-yarn-common-2.6.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/javax/xml/bind/jaxb-api/2.2.2/jaxb-api-2.2.2.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/javax/xml/bind/jaxb-api/2.2.2/jaxb-api-2.2.2.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/javax/xml/stream/stax-api/1.0-2/stax-api-1.0-2.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/javax/xml/stream/stax-api/1.0-2/stax-api-1.0-2.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/javax/activation/activation/1.1/activation-1.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/javax/activation/activation/1.1/activation-1.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/sun/jersey/jersey-client/1.9/jersey-client-1.9.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/sun/jersey/jersey-client/1.9/jersey-client-1.9.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/hadoop/hadoop-mapreduce-client-jobclient/2.6.0/hadoop-mapreduce-client-jobclient-2.6.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/hadoop/hadoop-mapreduce-client-jobclient/2.6.0/hadoop-mapreduce-client-jobclient-2.6.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/hadoop/hadoop-annotations/2.6.0/hadoop-annotations-2.6.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/hadoop/hadoop-annotations/2.6.0/hadoop-annotations-2.6.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/github/erictu/spark-intervalrdd_2.10/0.1-SNAPSHOT/spark-intervalrdd_2.10-0.1-SNAPSHOT.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/github/erictu/spark-intervalrdd_2.10/0.1-SNAPSHOT/spark-intervalrdd_2.10-0.1-SNAPSHOT.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/github/erictu/interval-tree_2.10/0.1-SNAPSHOT/interval-tree_2.10-0.1-SNAPSHOT.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/github/erictu/interval-tree_2.10/0.1-SNAPSHOT/interval-tree_2.10-0.1-SNAPSHOT.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/bdgenomics/adam/adam-core_2.10/0.19.1-SNAPSHOT/adam-core_2.10-0.19.1-SNAPSHOT.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/bdgenomics/adam/adam-core_2.10/0.19.1-SNAPSHOT/adam-core_2.10-0.19.1-20160518.141928-1073.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/scoverage/scalac-scoverage-plugin_2.10/1.1.1/scalac-scoverage-plugin_2.10-1.1.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/scoverage/scalac-scoverage-plugin_2.10/1.1.1/scalac-scoverage-plugin_2.10-1.1.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/commons-io/commons-io/2.4/commons-io-2.4.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/commons-io/commons-io/2.4/commons-io-2.4.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/slf4j/slf4j-log4j12/1.7.12/slf4j-log4j12-1.7.12.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/slf4j/slf4j-log4j12/1.7.12/slf4j-log4j12-1.7.12.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/google/guava/guava/16.0.1/guava-16.0.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/google/guava/guava/16.0.1/guava-16.0.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/bdgenomics/adam/adam-cli_2.10/0.19.1-SNAPSHOT/adam-cli_2.10-0.19.1-SNAPSHOT.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/bdgenomics/adam/adam-cli_2.10/0.19.1-SNAPSHOT/adam-cli_2.10-0.19.1-20160518.142039-818.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/bdgenomics/adam/adam-apis_2.10/0.19.1-SNAPSHOT/adam-apis_2.10-0.19.1-SNAPSHOT.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/bdgenomics/adam/adam-apis_2.10/0.19.1-SNAPSHOT/adam-apis_2.10-0.19.1-20160518.141948-1126.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/net/codingwell/scala-guice_2.10/4.0.0/scala-guice_2.10-4.0.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/net/codingwell/scala-guice_2.10/4.0.0/scala-guice_2.10-4.0.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/google/inject/guice/4.0/guice-4.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/google/inject/guice/4.0/guice-4.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/javax/inject/javax.inject/1/javax.inject-1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/javax/inject/javax.inject/1/javax.inject-1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/aopalliance/aopalliance/1.0/aopalliance-1.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/aopalliance/aopalliance/1.0/aopalliance-1.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/google/inject/extensions/guice-multibindings/4.0/guice-multibindings-4.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/google/inject/extensions/guice-multibindings/4.0/guice-multibindings-4.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/avro/avro/1.7.7/avro-1.7.7.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/avro/avro/1.7.7/avro-1.7.7.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/codehaus/jackson/jackson-core-asl/1.9.13/jackson-core-asl-1.9.13.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/codehaus/jackson/jackson-core-asl/1.9.13/jackson-core-asl-1.9.13.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/codehaus/jackson/jackson-mapper-asl/1.9.13/jackson-mapper-asl-1.9.13.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/codehaus/jackson/jackson-mapper-asl/1.9.13/jackson-mapper-asl-1.9.13.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/thoughtworks/paranamer/paranamer/2.3/paranamer-2.3.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/thoughtworks/paranamer/paranamer/2.3/paranamer-2.3.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/xerial/snappy/snappy-java/1.0.5/snappy-java-1.0.5.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/xerial/snappy/snappy-java/1.0.5/snappy-java-1.0.5.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/commons/commons-compress/1.4.1/commons-compress-1.4.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/commons/commons-compress/1.4.1/commons-compress-1.4.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/slf4j/slf4j-api/1.6.4/slf4j-api-1.6.4.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/slf4j/slf4j-api/1.6.4/slf4j-api-1.6.4.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/parquet/parquet-avro/1.8.1/parquet-avro-1.8.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/parquet/parquet-avro/1.8.1/parquet-avro-1.8.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/parquet/parquet-column/1.8.1/parquet-column-1.8.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/parquet/parquet-column/1.8.1/parquet-column-1.8.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/parquet/parquet-common/1.8.1/parquet-common-1.8.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/parquet/parquet-common/1.8.1/parquet-common-1.8.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/parquet/parquet-encoding/1.8.1/parquet-encoding-1.8.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/parquet/parquet-encoding/1.8.1/parquet-encoding-1.8.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/parquet/parquet-hadoop/1.8.1/parquet-hadoop-1.8.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/parquet/parquet-hadoop/1.8.1/parquet-hadoop-1.8.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/parquet/parquet-jackson/1.8.1/parquet-jackson-1.8.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/parquet/parquet-jackson/1.8.1/parquet-jackson-1.8.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/parquet/parquet-format/2.3.0-incubating/parquet-format-2.3.0-incubating.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/parquet/parquet-format/2.3.0-incubating/parquet-format-2.3.0-incubating.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/parquet/parquet-scala_2.10/1.8.1/parquet-scala_2.10-1.8.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/parquet/parquet-scala_2.10/1.8.1/parquet-scala_2.10-1.8.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/seqdoop/hadoop-bam/7.0.0/hadoop-bam-7.0.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/seqdoop/hadoop-bam/7.0.0/hadoop-bam-7.0.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/commons-cli/commons-cli/1.2/commons-cli-1.2.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/commons-cli/commons-cli/1.2/commons-cli-1.2.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/commons-httpclient/commons-httpclient/3.1/commons-httpclient-3.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/commons-httpclient/commons-httpclient/3.1/commons-httpclient-3.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/github/samtools/htsjdk/1.139/htsjdk-1.139.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/github/samtools/htsjdk/1.139/htsjdk-1.139.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/commons/commons-jexl/2.1.1/commons-jexl-2.1.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/commons/commons-jexl/2.1.1/commons-jexl-2.1.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/commons-logging/commons-logging/1.1.1/commons-logging-1.1.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/commons-logging/commons-logging/1.1.1/commons-logging-1.1.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/tukaani/xz/1.5/xz-1.5.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/tukaani/xz/1.5/xz-1.5.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/ant/ant/1.8.2/ant-1.8.2.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/ant/ant/1.8.2/ant-1.8.2.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/ant/ant-launcher/1.8.2/ant-launcher-1.8.2.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/ant/ant-launcher/1.8.2/ant-launcher-1.8.2.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/spark/spark-unsafe_2.10/1.5.2/spark-unsafe_2.10-1.5.2.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/spark/spark-unsafe_2.10/1.5.2/spark-unsafe_2.10-1.5.2.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/curator/curator-recipes/2.4.0/curator-recipes-2.4.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/curator/curator-recipes/2.4.0/curator-recipes-2.4.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/curator/curator-framework/2.4.0/curator-framework-2.4.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/curator/curator-framework/2.4.0/curator-framework-2.4.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/apache/commons/commons-math3/3.4.1/commons-math3-3.4.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/apache/commons/commons-math3/3.4.1/commons-math3-3.4.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/google/code/findbugs/jsr305/1.3.9/jsr305-1.3.9.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/google/code/findbugs/jsr305/1.3.9/jsr305-1.3.9.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/log4j/log4j/1.2.17/log4j-1.2.17.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/log4j/log4j/1.2.17/log4j-1.2.17.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/commons-net/commons-net/2.2/commons-net-2.2.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/commons-net/commons-net/2.2/commons-net-2.2.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/sun/jersey/jersey-core/1.9/jersey-core-1.9.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/sun/jersey/jersey-core/1.9/jersey-core-1.9.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.4.4/jackson-databind-2.4.4.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/fasterxml/jackson/core/jackson-databind/2.4.4/jackson-databind-2.4.4.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.4.0/jackson-annotations-2.4.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/fasterxml/jackson/core/jackson-annotations/2.4.0/jackson-annotations-2.4.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.4.4/jackson-core-2.4.4.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/fasterxml/jackson/core/jackson-core/2.4.4/jackson-core-2.4.4.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/spark-project/spark/unused/1.0.0/unused-1.0.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/spark-project/spark/unused/1.0.0/unused-1.0.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/scala-lang/scala-reflect/2.10.6/scala-reflect-2.10.6.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/scala-lang/scala-reflect/2.10.6/scala-reflect-2.10.6.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/fusesource/scalate/scalate-core_2.10/1.6.1/scalate-core_2.10-1.6.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/fusesource/scalate/scalate-core_2.10/1.6.1/scalate-core_2.10-1.6.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/fusesource/scalate/scalate-util_2.10/1.6.1/scalate-util_2.10-1.6.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/fusesource/scalate/scalate-util_2.10/1.6.1/scalate-util_2.10-1.6.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/scala-lang/scala-compiler/2.10.0/scala-compiler-2.10.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/scala-lang/scala-compiler/2.10.0/scala-compiler-2.10.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/net/liftweb/lift-json_2.10/2.6.2/lift-json_2.10-2.6.2.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/net/liftweb/lift-json_2.10/2.6.2/lift-json_2.10-2.6.2.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/scala-lang/scalap/2.10.4/scalap-2.10.4.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/scala-lang/scalap/2.10.4/scalap-2.10.4.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/scalatra/scalatra_2.10/2.4.0/scalatra_2.10-2.4.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/scalatra/scalatra_2.10/2.4.0/scalatra_2.10-2.4.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/scalatra/scalatra-common_2.10/2.4.0/scalatra-common_2.10-2.4.0.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/scalatra/scalatra-common_2.10/2.4.0/scalatra-common_2.10-2.4.0.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/clapper/grizzled-slf4j_2.10/1.0.2/grizzled-slf4j_2.10-1.0.2.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/clapper/grizzled-slf4j_2.10/1.0.2/grizzled-slf4j_2.10-1.0.2.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/scalatra/rl/rl_2.10/0.4.10/rl_2.10-0.4.10.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/scalatra/rl/rl_2.10/0.4.10/rl_2.10-0.4.10.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/com/googlecode/juniversalchardet/juniversalchardet/1.0.3/juniversalchardet-1.0.3.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/com/googlecode/juniversalchardet/juniversalchardet/1.0.3/juniversalchardet-1.0.3.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/eu/medsea/mimeutil/mime-util/2.1.3/mime-util-2.1.3.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/eu/medsea/mimeutil/mime-util/2.1.3/mime-util-2.1.3.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/joda-time/joda-time/2.9.1/joda-time-2.9.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/joda-time/joda-time/2.9.1/joda-time-2.9.1.jar
[INFO] Installing artifact /home/hadoop/.m2/repository/org/joda/joda-convert/1.8.1/joda-convert-1.8.1.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/joda/joda-convert/1.8.1/joda-convert-1.8.1.jar
[INFO] Installing artifact /home/hadoop/xubo/tools/mango/mango-cli/target/mango-cli-0.0.1-SNAPSHOT.jar to /home/hadoop/xubo/tools/mango/mango-cli/target/appassembler/repo/org/bdgenomics/mango/mango-cli/0.0.1-SNAPSHOT/mango-cli-0.0.1-SNAPSHOT.jar
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] mango: an ADAM-based genomics visualization toolkit  SUCCESS [  5.115 s]
[INFO] mango-core: an ADAM-based genomics visualization toolkit SUCCESS [01:10 min]
[INFO] mango-cli: an ADAM-based genomics visualization toolkit SUCCESS [54:22 min]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 55:38 min
[INFO] Finished at: 2016-05-29T22:47:18+08:00
[INFO] Final Memory: 33M/694M
[INFO] ------------------------------------------------------------------------
hadoop@Master:~/xubo/tools/mango$ 
0
0

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