加上-C
bgzip file.bed
tabix -C file.bed.gz
jbrowse add-track file.bed.gz --out /usr/local/jbrowse/mydata/ --load copy
也可以不用–load copy 使用 --load symlink 建立软连接
建立软连接
ln -s 原地址 新地址
ln -s /media/data/jb2fa/Aegilops_tauschii.bed.gz.csi /var/www/html/jbrowse2/Aegilops_tauschii.bed.gz.csi
修改config.json
{
"assemblies": [
{
"name": "Aegilops_tauschii",
"sequence": {
"type": "ReferenceSequenceTrack",
"trackId": "Aegilops_tauschii-ReferenceSequenceTrack",
"adapter": {
"type": "IndexedFastaAdapter",
"fastaLocation": {
"uri": "Aegilops_tauschii.fa",
"locationType": "UriLocation"
},
"faiLocation": {
"uri": "Aegilops_tauschii.fa.fai",
"locationType": "UriLocation"
}
}
}
}
],
"configuration": {},
"connections": [],
"defaultSession": {
"name": "New Session"
},
"tracks": [
{
"type": "FeatureTrack",
"trackId": "63_Aegilops_tauschii.bed",
"name": "63_Aegilops_tauschii.bed",
"adapter": {
"type": "BedTabixAdapter",
"bedGzLocation": {
"uri": "63_Aegilops_tauschii.bed.gz",
"locationType": "UriLocation"
},
"index": {
"location": {
"uri": "63_Aegilops_tauschii.bed.gz.csi",
"locationType": "UriLocation"
},
"indexType": "CSI"
}
},
"assemblyNames": [
"Aegilops_tauschii"
]
}
]
}