pymc3+arviz+theano windows安装，避免踩坑

Bailliu

已于 2024-10-04 21:50:57 修改

阅读量102

点赞数 1

文章标签： python 深度学习开发语言

于 2024-10-03 22:13:53 首次发布

本文链接：https://blog.csdn.net/Liuran84/article/details/142697013

版权

尝试安装了很多次，一直报各种各样的错误。找了很久，按照这个顺序安装必成功！

conda create -n pm -c conda-forge "python=3.8" libpython mkl-service m2w64-toolchain numba python-graphviz scipy

conda activate pm

pip install h5py

conda install -c anaconda netcdf4

pip install pymc3==3.11.0

此时，如果你import pymc3就会报错：

AttributeError: module 'numpy' has no attribute 'bool'.
`np.bool` was a deprecated alias for the builtin `bool`. To avoid this error in existing code, use `bool` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.bool_` here.
The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations。

不要紧张，此时我们只需要降低版本，将numpy降级到：pip install numpy==1.21.6，现在就可以正常使用了。

如果此时你尝试运行下面的测试代码，这时就会报错AttributeError: module 'arviz' has no attribute 'from_pymc3'，不要紧张，降低arviz的版本：pip install arviz==0.12，就可以了。

PyMC Example Gallery — PyMC example gallery

下面是一段来自上述官网的测试代码，可以用于验证pymc3安装的正确性。

import arviz as az
import matplotlib.pyplot as plt
import numpy as np
import pymc3 as pm
RANDOM_SEED = 8927
np.random.seed(RANDOM_SEED)
az.style.use("arviz-darkgrid")
# True parameter values
alpha, sigma = 1, 1
beta = [1, 2.5]

# Size of dataset
size = 100

# Predictor variable
X1 = np.random.randn(size)
X2 = np.random.randn(size) * 0.2

# Simulate outcome variable
Y = alpha + beta[0] * X1 + beta[1] * X2 + np.random.randn(size) * sigma
fig, axes = plt.subplots(1, 2, sharex=True, figsize=(10, 4))
axes[0].scatter(X1, Y, alpha=0.6)
axes[1].scatter(X2, Y, alpha=0.6)
axes[0].set_ylabel("Y")
axes[0].set_xlabel("X1")
axes[1].set_xlabel("X2")
basic_model = pm.Model()
if __name__ == '__main__':
 with basic_model:

    # Priors for unknown model parameters
    alpha = pm.Normal("alpha", mu=0, sigma=10)
    beta = pm.Normal("beta", mu=0, sigma=10, shape=2)
    sigma = pm.HalfNormal("sigma", sigma=1)

    # Expected value of outcome
    mu = alpha + beta[0] * X1 + beta[1] * X2

    # Likelihood (sampling distribution) of observations
    Y_obs = pm.Normal("Y_obs", mu=mu, sigma=sigma, observed=Y)

# instantiate sampler
    step = pm.Slice()

    # draw 5000 posterior samples
    trace = pm.sample(5000, step=step, return_inferencedata=False)
    az.plot_trace(trace)
    plt.show()

附录

pip list

Package Version
------------------- -----------
arviz 0.12.0
Brotli 1.0.9
certifi 2024.8.30
cffi 1.17.1
cftime 1.6.2
charset-normalizer 3.3.2
contourpy 1.1.1
cycler 0.12.1
dill 0.3.9
fastprogress 1.0.3
filelock 3.16.1
fonttools 4.54.1
graphviz 0.12
h2 4.0.0
h5netcdf 1.1.0
h5py 3.11.0
hpack 4.0.0
hyperframe 6.0.1
idna 3.10
importlib_metadata 8.5.0
importlib_resources 6.4.5
kiwisolver 1.4.7
llvmlite 0.41.0
matplotlib 3.7.5
mkl-fft 1.3.8
mkl-random 1.2.4
mkl-service 2.4.0
netCDF4 1.6.2
numba 0.58.1
numpy 1.21.6
packaging 24.1
pandas 2.0.3
patsy 0.5.6
pillow 10.4.0
pip 24.2
platformdirs 4.3.6
pooch 1.8.2
pycparser 2.22
pymc3 3.11.0
pyparsing 3.1.4
PySocks 1.7.1
python-dateutil 2.9.0.post0
pytz 2024.2
requests 2.32.3
scipy 1.10.1
setuptools 75.1.0
six 1.16.0
Theano-PyMC 1.1.0
typing_extensions 4.12.2
tzdata 2024.2
urllib3 2.2.3
wheel 0.44.0
win_inet_pton 1.1.0
xarray 2023.1.0
xarray-einstats 0.5.1
zipp 3.20.2
zstandard 0.22.0

conda list

# Name Version Build Channel
arviz 0.12.0 pypi_0 pypi
blas 1.0 mkl anaconda
brotli-python 1.0.9 py38hd77b12b_8 anaconda
bzip2 1.0.8 h2466b09_7 conda-forge
ca-certificates 2024.9.24 haa95532_0 anaconda
certifi 2024.8.30 py38haa95532_0 anaconda
cffi 1.17.1 py38h827c3e9_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
cftime 1.6.2 py38h080aedc_0 anaconda
charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge
contourpy 1.1.1 pypi_0 pypi
cycler 0.12.1 pypi_0 pypi
dill 0.3.9 pypi_0 pypi
fastprogress 1.0.3 pypi_0 pypi
filelock 3.16.1 pypi_0 pypi
fonttools 4.54.1 pypi_0 pypi
graphviz 2.38.0 4 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free
h2 4.0.0 py38haa95532_3 anaconda
h5netcdf 1.1.0 pypi_0 pypi
h5py 3.11.0 pypi_0 pypi
hdf4 4.2.13 h712560f_2 anaconda
hdf5 1.12.1 h51c971a_3 anaconda
hpack 4.0.0 pyh9f0ad1d_0 conda-forge
hyperframe 6.0.1 pyhd8ed1ab_0 conda-forge
icc_rt 2022.1.0 h6049295_2 anaconda
idna 3.10 pyhd8ed1ab_0 conda-forge
importlib-metadata 8.5.0 pyha770c72_0 conda-forge
importlib-resources 6.4.5 pypi_0 pypi
importlib_metadata 8.5.0 hd8ed1ab_0 conda-forge
intel-openmp 2023.1.0 h59b6b97_46320 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
jpeg 9e h827c3e9_3 anaconda
kiwisolver 1.4.7 pypi_0 pypi
libblas 3.9.0 20_win64_mkl conda-forge
libcblas 3.9.0 20_win64_mkl conda-forge
libcurl 7.88.1 h86230a5_2 anaconda
libffi 3.4.2 h8ffe710_5 conda-forge
libhwloc 2.11.1 default_h8125262_1000 conda-forge
libiconv 1.17 hcfcfb64_2 conda-forge
liblapack 3.9.0 20_win64_mkl conda-forge
libnetcdf 4.8.1 h6685c40_4 anaconda
libpython 2.1 py38_0 anaconda
libsqlite 3.46.1 h2466b09_0 conda-forge
libssh2 1.11.0 h291bd65_0 anaconda
libxml2 2.13.1 h24da03e_2 anaconda
libzip 1.8.0 h289538f_1 anaconda
llvmlite 0.41.0 py38hf2fb9eb_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
lz4-c 1.9.4 h2bbff1b_1 anaconda
m2w64-binutils 2.25.1 5 conda-forge
m2w64-bzip2 1.0.6 6 conda-forge
m2w64-crt-git 5.0.0.4636.2595836 2 conda-forge
m2w64-gcc 5.3.0 6 conda-forge
m2w64-gcc-ada 5.3.0 6 conda-forge
m2w64-gcc-fortran 5.3.0 6 conda-forge
m2w64-gcc-libgfortran 5.3.0 6 conda-forge
m2w64-gcc-libs 5.3.0 7 conda-forge
m2w64-gcc-libs-core 5.3.0 7 conda-forge
m2w64-gcc-objc 5.3.0 6 conda-forge
m2w64-gmp 6.1.0 2 conda-forge
m2w64-headers-git 5.0.0.4636.c0ad18a 2 conda-forge
m2w64-isl 0.16.1 2 conda-forge
m2w64-libiconv 1.14 6 conda-forge
m2w64-libmangle-git 5.0.0.4509.2e5a9a2 2 conda-forge
m2w64-libwinpthread-git 5.0.0.4634.697f757 2 conda-forge
m2w64-make 4.1.2351.a80a8b8 2 conda-forge
m2w64-mpc 1.0.3 3 conda-forge
m2w64-mpfr 3.1.4 4 conda-forge
m2w64-pkg-config 0.29.1 2 conda-forge
m2w64-toolchain 5.3.0 7 conda-forge
m2w64-tools-git 5.0.0.4592.90b8472 2 conda-forge
m2w64-windows-default-manifest 6.4 3 conda-forge
m2w64-winpthreads-git 5.0.0.4634.697f757 2 conda-forge
m2w64-zlib 1.2.8 10 conda-forge
matplotlib 3.7.5 pypi_0 pypi
mkl 2023.2.0 h6a75c08_50497 conda-forge
mkl-service 2.4.0 py38h2bbff1b_1 anaconda
mkl_fft 1.3.8 py38h2bbff1b_0 anaconda
mkl_random 1.2.4 py38h59b6b97_0 anaconda
msys2-conda-epoch 20160418 1 conda-forge
netcdf4 1.6.2 py38hda396d2_0 anaconda
numba 0.58.1 py38hd77b12b_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
numpy 1.21.6 pypi_0 pypi
openssl 3.0.15 h827c3e9_0 anaconda
packaging 24.1 pyhd8ed1ab_0 conda-forge
pandas 2.0.3 pypi_0 pypi
patsy 0.5.6 pypi_0 pypi
pillow 10.4.0 pypi_0 pypi
pip 24.2 pyh8b19718_1 conda-forge
platformdirs 4.3.6 pyhd8ed1ab_0 conda-forge
pooch 1.8.2 pyhd8ed1ab_0 conda-forge
pthreads-win32 2.9.1 hfa6e2cd_3 conda-forge
pycparser 2.22 pyhd8ed1ab_0 conda-forge
pymc3 3.11.0 pypi_0 pypi
pyparsing 3.1.4 pypi_0 pypi
pysocks 1.7.1 pyh0701188_6 conda-forge
python 3.8.20 h8205438_0 anaconda
python-dateutil 2.9.0.post0 pypi_0 pypi
python-graphviz 0.12 py_0 conda-forge
pytz 2024.2 pypi_0 pypi
requests 2.32.3 pyhd8ed1ab_0 conda-forge
scipy 1.10.1 py38hdcfc7df_1 anaconda
setuptools 75.1.0 pyhd8ed1ab_0 conda-forge
six 1.16.0 pypi_0 pypi
sqlite 3.45.3 h2bbff1b_0 anaconda
tbb 2021.13.0 hc790b64_0 conda-forge
theano-pymc 1.1.0 pypi_0 pypi
tk 8.6.13 h5226925_1 conda-forge
typing-extensions 4.12.2 pypi_0 pypi
tzdata 2024.2 pypi_0 pypi
ucrt 10.0.22621.0 h57928b3_0 conda-forge
urllib3 2.2.3 pyhd8ed1ab_0 conda-forge
vc 14.3 h8a93ad2_21 conda-forge
vc14_runtime 14.40.33810 ha82c5b3_21 conda-forge
vs2015_runtime 14.40.33810 h3bf8584_21 conda-forge
wheel 0.44.0 pyhd8ed1ab_0 conda-forge
win_inet_pton 1.1.0 pyh7428d3b_7 conda-forge
xarray 2023.1.0 pypi_0 pypi
xarray-einstats 0.5.1 pypi_0 pypi
xz 5.4.6 h8cc25b3_1 anaconda
zipp 3.20.2 pyhd8ed1ab_0 conda-forge
zlib 1.2.13 h8cc25b3_1 anaconda
zstandard 0.22.0 py38h3469f8a_0 anaconda
zstd 1.5.5 hd43e919_2 anaconda