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最新推荐文章于 2023-09-20 07:30:00 发布

NeoBilly

最新推荐文章于 2023-09-20 07:30:00 发布

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本文链接：https://blog.csdn.net/NeoBilly/article/details/13162387

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wc -l bed.v4.lnc v4.bed.rmCoding.cnci

ls fpkm | perl -ne 'chomp ; if($. != 1){ print "\t";} print $_;' > header

for dir in `ls fpkm|head -1`; do awk -F "\t" 'NR != 1' fpkm/$dir/genes.fpkm_tracking | sort -k 1 | cut -f 1 >fpkm.loci; done
for dir in `ls fpkm`; do awk -F "\t" 'NR != 1' fpkm/$dir/genes.fpkm_tracking | sort -k 1 | cut -f 10 |paste fpkm.loci - > t.fpkm.loci ; mv t.fpkm.loci fpkm.loci; done

for dir in `ls fpkm|head -1`; do awk -F "\t" 'NR != 1' fpkm/$dir/isoforms.fpkm_tracking | sort -k 1 | cut -f 1 >fpkm.rna; done
for dir in `ls fpkm`; do awk -F "\t" 'NR != 1' fpkm/$dir/isoforms.fpkm_tracking | sort -k 1 | cut -f 10 |paste fpkm.rna - > t.fpkm.rna ; mv t.fpkm.rna fpkm.rna; done

tail fpkm.loci | less -S

表达值图示化

wc -l v4.bed.rmCoding.cnci bed.v4.lnc loci.tracking loci.loci