numpy:getfromtex函数详解

重点注意:

  1. dtype表示最后的结果中数据的类型,并不判断原始数据。例如读取下面这行数据:在这里插入图片描述
    将会得到[NaN, 18600, 19600…],可以通过usecols来选择不要第一列
  2. skip_header和skip_footer可以同时使用,表示略过前/后n行
  3. skip_footer和max_rows不能同时使用,max_rows表示读取行的最大数,默认是阅读所有行
  4. 行数列数都是从0开始的,例如使用usecols=range(3),则代表读取[0,1,2,3,4]则是第1,2,3,4,5列。

帮助文档:

Help on function genfromtxt in module numpy.lib.npyio:

genfromtxt(fname, dtype=<class 'float'>, comments='#', delimiter=None, skip_header=0, skip_footer=0,
deletechars=None, replace_space='_', autostrip=False, case_sensitive=True, defaultfmt='f%i',
unpack=None, usemask=False, loose=True, invalid_raise=True, max_rows=None, encoding='bytes')
Load data from a text file, with missing values handled as specified.

Each line past the first `skip_header` lines is split at the `delimiter`
character, and characters following the `comments` character are discarded.

Parameters
----------
fname : file, str, pathlib.Path, list of str, generator
    File, filename, list, or generator to read.  If the filename
    extension is `.gz` or `.bz2`, the file is first decompressed. Note
    that generators must return byte strings in Python 3k.  The strings
    in a list or produced by a generator are treated as lines.
dtype : dtype, optional
    Data type of the resulting array.
    If None, the dtypes will be determined by the contents of each
    column, individually.
comments : str, optional
    The character used to indicate the start of a comment.
    All the characters occurring on a line after a comment are discarded
delimiter : str, int, or sequence, optional
    The string used to separate values.  By default, any consecutive
    whitespaces act as delimiter.  An integer or sequence of integers
    can also be provided as width(s) of each field.
skiprows : int, optional
    `skiprows` was removed in numpy 1.10. Please use `skip_header` instead.
skip_header : int, optional
    The number of lines to skip at the beginning of the file.
skip_footer : int, optional
    The number of lines to skip at the end of the file.
converters : variable, optional
    The set of functions that convert the data of a column to a value.
    The converters can also be used to provide a default value
    for missing data: ``converters = {3: lambda s: float(s or 0)}``.
missing : variable, optional
    `missing` was removed in numpy 1.10. Please use `missing_values`
    instead.
missing_values : variable, optional
    The set of strings corresponding to missing data.
filling_values : variable, optional
    The set of values to be used as default when the data are missing.
usecols : sequence, optional
    Which columns to read, with 0 being the first.  For example,
    ``usecols = (1, 4, 5)`` will extract the 2nd, 5th and 6th columns.
names : {None, True, str, sequence}, optional
    If `names` is True, the field names are read from the first line after
    the first `skip_header` lines.  This line can optionally be proceeded
    by a comment delimeter. If `names` is a sequence or a single-string of
    comma-separated names, the names will be used to define the field names
    in a structured dtype. If `names` is None, the names of the dtype
    fields will be used, if any.
excludelist : sequence, optional
    A list of names to exclude. This list is appended to the default list
    ['return','file','print']. Excluded names are appended an underscore:
    for example, `file` would become `file_`.
deletechars : str, optional
    A string combining invalid characters that must be deleted from the
    names.
defaultfmt : str, optional
    A format used to define default field names, such as "f%i" or "f_%02i".
autostrip : bool, optional
    Whether to automatically strip white spaces from the variables.
replace_space : char, optional
    Character(s) used in replacement of white spaces in the variables
    names. By default, use a '_'.
case_sensitive : {True, False, 'upper', 'lower'}, optional
    If True, field names are case sensitive.
    If False or 'upper', field names are converted to upper case.
    If 'lower', field names are converted to lower case.
unpack : bool, optional
    If True, the returned array is transposed, so that arguments may be
    unpacked using ``x, y, z = loadtxt(...)``
usemask : bool, optional
    If True, return a masked array.
    If False, return a regular array.
loose : bool, optional
    If True, do not raise errors for invalid values.
invalid_raise : bool, optional
    If True, an exception is raised if an inconsistency is detected in the
    number of columns.
    If False, a warning is emitted and the offending lines are skipped.
max_rows : int,  optional
    The maximum number of rows to read. Must not be used with skip_footer
    at the same time.  If given, the value must be at least 1. Default is
    to read the entire file.

    .. versionadded:: 1.10.0
encoding : str, optional
    Encoding used to decode the inputfile. Does not apply when `fname` is
    a file object.  The special value 'bytes' enables backward compatibility
    workarounds that ensure that you receive byte arrays when possible
    and passes latin1 encoded strings to converters. Override this value to
    receive unicode arrays and pass strings as input to converters.  If set
    to None the system default is used. The default value is 'bytes'.

    .. versionadded:: 1.14.0

Returns
-------
out : ndarray
    Data read from the text file. If `usemask` is True, this is a
    masked array.

See Also
--------
numpy.loadtxt : equivalent function when no data is missing.

Notes
-----
* When spaces are used as delimiters, or when no delimiter has been given
  as input, there should not be any missing data between two fields.
* When the variables are named (either by a flexible dtype or with `names`,
  there must not be any header in the file (else a ValueError
  exception is raised).
* Individual values are not stripped of spaces by default.
  When using a custom converter, make sure the function does remove spaces.

References
----------
.. [1] NumPy User Guide, section `I/O with NumPy
       <http://docs.scipy.org/doc/numpy/user/basics.io.genfromtxt.html>`_.

Examples
---------
>>> from io import StringIO
>>> import numpy as np

Comma delimited file with mixed dtype

>>> s = StringIO("1,1.3,abcde")
>>> data = np.genfromtxt(s, dtype=[('myint','i8'),('myfloat','f8'),
... ('mystring','S5')], delimiter=",")
>>> data
array((1, 1.3, 'abcde'),
      dtype=[('myint', '<i8'), ('myfloat', '<f8'), ('mystring', '|S5')])

Using dtype = None

>>> s.seek(0) # needed for StringIO example only
>>> data = np.genfromtxt(s, dtype=None,
... names = ['myint','myfloat','mystring'], delimiter=",")
>>> data
array((1, 1.3, 'abcde'),
      dtype=[('myint', '<i8'), ('myfloat', '<f8'), ('mystring', '|S5')])

Specifying dtype and names

>>> s.seek(0)
>>> data = np.genfromtxt(s, dtype="i8,f8,S5",
... names=['myint','myfloat','mystring'], delimiter=",")
>>> data
array((1, 1.3, 'abcde'),
      dtype=[('myint', '<i8'), ('myfloat', '<f8'), ('mystring', '|S5')])

An example with fixed-width columns

>>> s = StringIO("11.3abcde")
>>> data = np.genfromtxt(s, dtype=None, names=['intvar','fltvar','strvar'],
...     delimiter=[1,3,5])
>>> data
array((1, 1.3, 'abcde'),
      dtype=[('intvar', '<i8'), ('fltvar', '<f8'), ('strvar', '|S5')])
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