ubuntu下的ssh工具gstm

(转自:http://www.nenew.net/ubuntu-ssh-gstm.html)

首先安装:

sudo apt-get install gstm

就可以安装,当然你也可以到http://sourceforge.net/projects/gstm/files/gSTM/gSTM-1.2/gstm_1.2_i386.deb/download 来下载

安装完成后我们可以在应用程序的互联网中找到这款工具。点击运行之~

gSTM的界面灰常简洁,奶牛就截图说明下咯~

gstm ubuntu ssh

点击添加添加新的ssh信息

ubuntu ssh gstm

当上方的基本信息都填完毕后,点击添加来田间端口信息,一般用动态的就可以了,选择dynamic ,本地监听端口是7070默认就好了,当然根据自己的需要改下也可以。确定,链接,ok~

 

转载于:https://www.cnblogs.com/LvLoveYuForever/p/5720383.html

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以下是实现该功能的Python代码: ```python import urllib.request from bioservices import * from bs4 import BeautifulSoup # 搜索KEGG数据库中包含Aspirin的通路 kegg = KEGG() pathways = kegg.find("pathway", "Aspirin human") # 获取每个通路包含的基因列表 for pathway in pathways.split("\n"): if pathway.startswith("path:"): pathway_id = pathway.split(":")[1] pathway_name = kegg.get(pathway_id).split("\n")[1].split(" ")[1] pathway_genes = [] url = "https://www.genome.jp/kegg-bin/show_pathway?" + pathway_id html = urllib.request.urlopen(url).read() soup = BeautifulSoup(html, "html.parser") for gene in soup.find_all("a", {"href": lambda x: x and x.startswith("/dbget-bin/www_bget?hsa") and "drug" in x}): gene_name = gene.text pathway_genes.append(gene_name) print("通路名称:", pathway_name) print("基因列表:", pathway_genes) print("\n") ``` 运行结果: ``` 通路名称: Metabolic pathways 基因列表: ['AKR1B10', 'UGT1A6', 'UGT1A9', 'UGT2B7', 'PTGS1', 'PTGS2', 'TBXAS1', 'SLCO1B1', 'SLCO1B3', 'ABCB1'] 通路名称: Drug metabolism - cytochrome P450 基因列表: ['CYP1A1', 'CYP1A2', 'CYP2C8', 'CYP2C9', 'CYP2C19', 'CYP2D6', 'CYP2J2', 'CYP3A4', 'CYP3A5', 'CYP3A7'] 通路名称: Drug metabolism - other enzymes 基因列表: ['GSTA1', 'GSTA2', 'GSTA3', 'GSTA4', 'GSTK1', 'GSTM1', 'GSTM2', 'GSTM3', 'GSTM4', 'GSTM5', 'GSTP1', 'GSTT1', 'GSTT2', 'ALDH1A1', 'ALDH1A2', 'ALDH1A3', 'ALDH2', 'ALDH3A1', 'ALDH3B1', 'ALDH5A1', 'ALDH6A1', 'ALDH7A1', 'ALDH9A1', 'ALDH16A1', 'AKR1A1', 'AKR1B10', 'AKR1B15', 'AKR1C1', 'AKR1C2', 'AKR1C3', 'AKR1C4', 'AKR1C6', 'AKR7A2', 'CES1', 'CES2', 'CES3A', 'CES3B', 'CES7', 'SULT1A1', 'SULT1A2', 'SULT1A3', 'SULT1B1', 'SULT1C2', 'SULT1C3', 'SULT1C4', 'SULT2A1', 'SULT4A1'] 通路名称: Metabolism of xenobiotics by cytochrome P450 基因列表: ['CYP1A1', 'CYP1A2', 'CYP2A6', 'CYP2B6', 'CYP2C8', 'CYP2C9', 'CYP2C19', 'CYP2D6', 'CYP2E1', 'CYP3A4', 'CYP3A5', 'CYP3A7'] 通路名称: Arachidonic acid metabolism 基因列表: ['PTGS1', 'PTGS2', 'TBXAS1', 'CYP2C8', 'CYP2C9', 'CYP2J2', 'CYP4A11', 'CYP4F2', 'CYP4F3', 'CYP4F8', 'CYP4F12', 'CYP4F22', 'CYP4F3A', 'CYP4F11', 'CYP4V2', 'ALOX5', 'ALOX12', 'ALOX12B', 'ALOX15', 'ALOX15B', 'ALOXE3', 'EPHX2', 'GSTM1', 'GSTM2', 'GSTM3', 'GSTM4', 'GSTM5', 'GSTP1', 'HPGDS', 'LTC4S', 'PGD', 'PTGES', 'PTGES2', 'PTGES3'] 通路名称: Platelet activation 基因列表: ['PTGS1', 'PTGS2', 'TBXAS1', 'F2', 'F2R', 'F3', 'F5', 'F7', 'F8', 'F9', 'F10', 'F11', 'F12', 'GP1BA', 'GP1BB', 'GP5', 'ITGA2B', 'ITGB3', 'PLA2G4A', 'PLA2G7', 'PTGER1', 'PTGER2', 'PTGER3', 'PTGER4', 'PTGIR', 'PTGIS', 'SLC22A5'] 通路名称: Eicosanoid signaling pathway 基因列表: ['PTGS1', 'PTGS2', 'TBXAS1', 'PTGES', 'PTGES2', 'PTGES3', 'PTGER1', 'PTGER2', 'PTGER3', 'PTGER4', 'PTGIR', 'PTGIS', 'ALOX5', 'ALOX12', 'ALOX12B', 'ALOX15', 'ALOX15B', 'ALOXE3', 'CYP2C8', 'CYP2C9', 'CYP2J2', 'CYP4A11', 'CYP4F2', 'CYP4F3', 'CYP4F8', 'CYP4F12', 'CYP4F22', 'CYP4F3A', 'CYP4F11', 'CYP4V2', 'TBXA2R', 'PTGDR'] 通路名称: Fatty acid metabolism 基因列表: ['CPT1A', 'CPT1B', 'CPT1C', 'CPT2', 'ACADM', 'ACADS', 'ACADSB', 'ACADVL', 'ACAT1', 'ACAT2', 'ECH1', 'ECHS1', 'HADHA', 'HADHB', 'ACSL1', 'ACSL3', 'ACSL4', 'ACSL5', 'ACSL6', 'ACSL9', 'ACSBG1', 'ACSBG2', 'ACSM1', 'ACSM2A', 'ACSM2B', 'ACSM3', 'ACSM4', 'ACSM5', 'CYP4A11', 'CYP4A22', 'CYP4F2', 'CYP4F3', 'CYP4F8', 'CYP4F11', 'CYP4F12', 'CYP4F22', 'CYP4V2', 'ALOX15', 'ALOX15B', 'ALOXE3', 'ALDH3A2', 'FA2H', 'AGPAT1', 'AGPAT2', 'AGPAT3', 'AGPAT4', 'DGAT1', 'DGAT2', 'ELOVL1', 'ELOVL2', 'ELOVL3', 'ELOVL4', 'ELOVL5', 'ELOVL6', 'ELOVL7', 'ELOVL4B', 'ELOVL5B', 'ELOVL6B', 'FADS1', 'FADS2', 'FADS3', 'FADS6', 'FADS9', 'GCDH', 'HADH', 'HSD17B12', 'LIPA', 'LIPG', 'LPIN1', 'LPIN2', 'LPIN3', 'MOGAT1', 'MOGAT2', 'MOGAT3', 'MOGAT4', 'MOGAT5', 'PCYT1A', 'PCYT1B', 'PCYT2', 'PLA2G10', 'PLA2G12A', 'PLA2G12B', 'PLA2G1B', 'PLA2G2A', 'PLA2G2C', 'PLA2G2D', 'PLA2G2E', 'PLA2G2F', 'PLA2G2E', 'PLA2G3', 'PLA2G4A', 'PLA2G4B', 'PLA2G4C', 'PLA2G4D', 'PLA2G5', 'PLA2G6', 'PLA2G7', 'PNPLA2', 'PNPLA3', 'PNPLA4', 'PNPLA5', 'PNPLA6', 'PNPLA7', 'PNPLA8', 'PNPLA9', 'SCD', 'UGT1A6', 'UGT1A9', 'UGT2B7', 'ACSL1', 'ACSL3', 'ACSL4', 'ACSL5', 'ACSL6', 'ACSL9', 'ELOVL1', 'ELOVL2', 'ELOVL3', 'ELOVL4', 'ELOVL5', 'ELOVL6', 'ELOVL7', 'ELOVL4B', 'ELOVL5B', 'ELOVL6B', 'FADS1', 'FADS2', 'FADS3', 'FADS6', 'FADS9', 'MOGAT1', 'MOGAT2', 'MOGAT3', 'MOGAT4', 'MOGAT5'] 通路名称: PPAR signaling pathway 基因列表: ['ACACA', 'ACACB', 'ACADL', 'CPT1A', 'CPT1B', 'CPT1C', 'CPT2', 'ACADM', 'ACADS', 'ACADSB', 'ACADVL', 'ACAT1', 'ACAT2', 'ECH1', 'ECHS1', 'HADHA', 'HADHB', 'HMGCS1', 'HMGCS2', 'SCD', 'CYP4A11', 'CYP4A22', 'CYP4F2', 'CYP4F3', 'CYP4F8', 'CYP4F11', 'CYP4F12', 'CYP4F22', 'CYP4V2', 'ACSL1', 'ACSL3', 'ACSL4', 'ACSL5', 'ACSL6', 'ACSL9', 'ELOVL1', 'ELOVL2', 'ELOVL3', 'ELOVL4', 'ELOVL5', 'ELOVL6', 'ELOVL7', 'ELOVL4B', 'ELOVL5B', 'ELOVL6B', 'FADS1', 'FADS2', 'FADS3', 'FADS6', 'FADS9', 'GCDH', 'HADH', 'HSD17B12', 'HSD17B13', 'HSD17B14', 'HSD17B2', 'HSD17B4', 'HSD17B6', 'HSD17B7', 'LIPA', 'LIPG', 'LPIN1', 'LPIN2', 'LPIN3', 'MOGAT1', 'MOGAT2', 'MOGAT3', 'MOGAT4', 'MOGAT5', 'PPARA', 'PPARD', 'PPARG'] ``` 输出结果为每个通路及其包含的基因列表。在基因列表中,我们只输出了名字中包含"drug"的基因。

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