基因数据处理55之cs-bwamem安装记录（idea maven ，没有通过pl）

最新推荐文章于 2023-07-15 07:00:00 发布
最新推荐文章于 2023-07-15 07:00:00 发布
阅读量547 收藏
点赞数
分类专栏： 基因数据处理 文章标签： 基因数据处理 Adam Spark
版权声明：本文为博主原创文章，遵循 CC 4.0 BY-SA 版权协议，转载请附上原文出处链接和本声明。
本文链接：https://blog.csdn.net/xubo245/article/details/78829273
版权

project下的pom


    D:\1win7\java\jdk\bin\java "-Dmaven.home=D:\1win7\idea\IntelliJ IDEA Community Edition 15.0.4\plugins\maven\lib\maven3" "-Dclassworlds.conf=D:\1win7\idea\IntelliJ IDEA Community Edition 15.0.4\plugins\maven\lib\maven3\bin\m2.conf" -Didea.launcher.port=7535 "-Didea.launcher.bin.path=D:\1win7\idea\IntelliJ IDEA Community Edition 15.0.4\bin" -Dfile.encoding=UTF-8 -classpath "D:\1win7\idea\IntelliJ IDEA Community Edition 15.0.4\plugins\maven\lib\maven3\boot\plexus-classworlds-2.4.jar;D:\1win7\idea\IntelliJ IDEA Community Edition 15.0.4\lib\idea_rt.jar" com.intellij.rt.execution.application.AppMain org.codehaus.classworlds.Launcher -Didea.version=15.0.4 compile
    [INFO] Scanning for projects...
    [WARNING] 
    [WARNING] Some problems were encountered while building the effective model for cs.ucla.edu:cloud-scale-bwamem:jar:0.2.0
    [WARNING] 'dependencies.dependency.systemPath' for org.apache.spark:spark-core_${scala.artifact.suffix}:jar should use a variable instead of a hard-coded path D:/1win7/java/otherJar/spark-assembly-1.5.2-hadoop2.6.0.jar @ line 246, column 25
    [WARNING] 'build.plugins.plugin.version' for org.apache.maven.plugins:maven-shade-plugin is missing. @ line 145, column 21
    [WARNING] 'build.plugins.plugin.version' for org.scala-tools:maven-scala-plugin is missing. @ line 89, column 21
    [WARNING] 'dependencies.dependency.exclusions.exclusion.artifactId' for org.apache.hadoop:hadoop-client:jar with value '*' does not match a valid id pattern. @ line 227, column 29
    [WARNING] 'dependencies.dependency.exclusions.exclusion.artifactId' for org.apache.hadoop:hadoop-client:jar with value '*' does not match a valid id pattern. @ line 231, column 29
    [WARNING] 
    [WARNING] It is highly recommended to fix these problems because they threaten the stability of your build.
    [WARNING] 
    [WARNING] For this reason, future Maven versions might no longer support building such malformed projects.
    [WARNING] 
    [INFO]                                                                         
    [INFO] ------------------------------------------------------------------------
    [INFO] Building Cloud-Scale-BWAMEM 0.2.0
    [INFO] ------------------------------------------------------------------------
    Downloading: http://scala-tools.org/repo-releases/org/scala-tools/maven-scala-plugin/maven-metadata.xml
    Downloading: http://scala-tools.org/repo-releases/org/apache/maven/plugins/maven-shade-plugin/maven-metadata.xml
    Downloading: http://repo.akka.io/releases/com/twitter/parquet-column/1.4.3/parquet-column-1.4.3.pom
    Downloading: http://scala-tools.org/repo-releases/com/twitter/parquet-column/1.4.3/parquet-column-1.4.3.pom
    [WARNING] The POM for com.twitter:parquet-column:jar:1.4.3 is missing, no dependency information available
    Downloading: http://repo.akka.io/releases/com/twitter/parquet-hadoop/1.4.3/parquet-hadoop-1.4.3.pom
    Downloading: http://scala-tools.org/repo-releases/com/twitter/parquet-hadoop/1.4.3/parquet-hadoop-1.4.3.pom
    Downloading: http://repo1.maven.org/maven2/com/twitter/parquet-hadoop/1.4.3/parquet-hadoop-1.4.3.pom
    Downloaded: http://repo1.maven.org/maven2/com/twitter/parquet-hadoop/1.4.3/parquet-hadoop-1.4.3.pom (4 KB at 4.5 KB/sec)
    Downloading: http://repo.akka.io/releases/com/twitter/parquet-format/2.0.0/parquet-format-2.0.0.pom
    Downloading: http://scala-tools.org/repo-releases/com/twitter/parquet-format/2.0.0/parquet-format-2.0.0.pom
    Downloading: http://repo1.maven.org/maven2/com/twitter/parquet-format/2.0.0/parquet-format-2.0.0.pom
    Downloaded: http://repo1.maven.org/maven2/com/twitter/parquet-format/2.0.0/parquet-format-2.0.0.pom (6 KB at 11.6 KB/sec)
    Downloading: http://repo.akka.io/releases/com/twitter/parquet-jackson/1.4.3/parquet-jackson-1.4.3.pom
    Downloading: http://scala-tools.org/repo-releases/com/twitter/parquet-jackson/1.4.3/parquet-jackson-1.4.3.pom
    Downloading: http://repo1.maven.org/maven2/com/twitter/parquet-jackson/1.4.3/parquet-jackson-1.4.3.pom
    Downloaded: http://repo1.maven.org/maven2/com/twitter/parquet-jackson/1.4.3/parquet-jackson-1.4.3.pom (3 KB at 5.7 KB/sec)
    Downloading: http://repo.akka.io/releases/org/bdgenomics/bdg-formats/bdg-formats/0.2.0/bdg-formats-0.2.0.pom
    Downloading: http://scala-tools.org/repo-releases/org/bdgenomics/bdg-formats/bdg-formats/0.2.0/bdg-formats-0.2.0.pom
    Downloading: http://repo1.maven.org/maven2/org/bdgenomics/bdg-formats/bdg-formats/0.2.0/bdg-formats-0.2.0.pom
    Downloaded: http://repo1.maven.org/maven2/org/bdgenomics/bdg-formats/bdg-formats/0.2.0/bdg-formats-0.2.0.pom (5 KB at 7.9 KB/sec)
    Downloading: http://repo.akka.io/releases/org/bdgenomics/adam/adam-core/0.14.0/adam-core-0.14.0.pom
    Downloading: http://scala-tools.org/repo-releases/org/bdgenomics/adam/adam-core/0.14.0/adam-core-0.14.0.pom
    Downloading: http://repo1.maven.org/maven2/org/bdgenomics/adam/adam-core/0.14.0/adam-core-0.14.0.pom
    Downloaded: http://repo1.maven.org/maven2/org/bdgenomics/adam/adam-core/0.14.0/adam-core-0.14.0.pom (8 KB at 11.6 KB/sec)
    Downloading: http://repo.akka.io/releases/org/bdgenomics/adam/adam-parent/0.14.0/adam-parent-0.14.0.pom
    Downloading: http://scala-tools.org/repo-releases/org/bdgenomics/adam/adam-parent/0.14.0/adam-parent-0.14.0.pom
    Downloading: http://repo1.maven.org/maven2/org/bdgenomics/adam/adam-parent/0.14.0/adam-parent-0.14.0.pom
    Downloaded: http://repo1.maven.org/maven2/org/bdgenomics/adam/adam-parent/0.14.0/adam-parent-0.14.0.pom (20 KB at 9.9 KB/sec)
    Downloading: http://repo.akka.io/releases/org/scoverage/scalac-scoverage-plugin_2.10/0.99.2/scalac-scoverage-plugin_2.10-0.99.2.pom
    Downloading: http://scala-tools.org/repo-releases/org/scoverage/scalac-scoverage-plugin_2.10/0.99.2/scalac-scoverage-plugin_2.10-0.99.2.pom
    [WARNING] The POM for org.scoverage:scalac-scoverage-plugin_2.10:jar:0.99.2 is missing, no dependency information available
    Downloading: http://repo.akka.io/releases/org/apache/spark/spark-core_2.10/1.1.0/spark-core_2.10-1.1.0.pom
    Downloading: http://scala-tools.org/repo-releases/org/apache/spark/spark-core_2.10/1.1.0/spark-core_2.10-1.1.0.pom
    Downloading: http://repo1.maven.org/maven2/org/apache/spark/spark-core_2.10/1.1.0/spark-core_2.10-1.1.0.pom
    Downloaded: http://repo1.maven.org/maven2/org/apache/spark/spark-core_2.10/1.1.0/spark-core_2.10-1.1.0.pom (11 KB at 4.9 KB/sec)
    Downloading: http://repo.akka.io/releases/org/apache/spark/spark-parent/1.1.0/spark-parent-1.1.0.pom
    Downloading: http://scala-tools.org/repo-releases/org/apache/spark/spark-parent/1.1.0/spark-parent-1.1.0.pom
    Downloading: http://repo1.maven.org/maven2/org/apache/spark/spark-parent/1.1.0/spark-parent-1.1.0.pom
    Downloaded: http://repo1.maven.org/maven2/org/apache/spark/spark-parent/1.1.0/spark-parent-1.1.0.pom (40 KB at 26.4 KB/sec)
    Downloading: http://repo.akka.io/releases/org/slf4j/jul-to-slf4j/1.7.5/jul-to-slf4j-1.7.5.pom
    Downloading: http://scala-tools.org/repo-releases/org/slf4j/jul-to-slf4j/1.7.5/jul-to-slf4j-1.7.5.pom
    [WARNING] The POM for org.slf4j:jul-to-slf4j:jar:1.7.5 is missing, no dependency information available
    Downloading: http://repo.akka.io/releases/org/slf4j/jcl-over-slf4j/1.7.5/jcl-over-slf4j-1.7.5.pom
    Downloading: http://scala-tools.org/repo-releases/org/slf4j/jcl-over-slf4j/1.7.5/jcl-over-slf4j-1.7.5.pom
    [WARNING] The POM for org.slf4j:jcl-over-slf4j:jar:1.7.5 is missing, no dependency information available
    Downloading: http://repo.akka.io/releases/com/ning/compress-lzf/1.0.0/compress-lzf-1.0.0.pom
    Downloading: http://scala-tools.org/repo-releases/com/ning/compress-lzf/1.0.0/compress-lzf-1.0.0.pom
    Downloading: http://repo1.maven.org/maven2/com/ning/compress-lzf/1.0.0/compress-lzf-1.0.0.pom
    Downloaded: http://repo1.maven.org/maven2/com/ning/compress-lzf/1.0.0/compress-lzf-1.0.0.pom (8 KB at 14.1 KB/sec)
    Downloading: http://repo.akka.io/releases/org/xerial/snappy/snappy-java/1.0.5.3/snappy-java-1.0.5.3.pom
    Downloading: http://scala-tools.org/repo-releases/org/xerial/snappy/snappy-java/1.0.5.3/snappy-java-1.0.5.3.pom
    Downloading: http://repo1.maven.org/maven2/org/xerial/snappy/snappy-java/1.0.5.3/snappy-java-1.0.5.3.pom
    Downloaded: http://repo1.maven.org/maven2/org/xerial/snappy/snappy-java/1.0.5.3/snappy-java-1.0.5.3.pom (13 KB at 11.7 KB/sec)
    Downloading: http://repo.akka.io/releases/com/twitter/chill_2.10/0.3.6/chill_2.10-0.3.6.pom
    Downloading: http://scala-tools.org/repo-releases/com/twitter/chill_2.10/0.3.6/chill_2.10-0.3.6.pom
    Downloading: http://repo1.maven.org/maven2/com/twitter/chill_2.10/0.3.6/chill_2.10-0.3.6.pom
    Downloaded: http://repo1.maven.org/maven2/com/twitter/chill_2.10/0.3.6/chill_2.10-0.3.6.pom (3 KB at 4.8 KB/sec)
    Downloading: http://repo.akka.io/releases/com/twitter/chill-java/0.3.6/chill-java-0.3.6.pom
    Downloading: http://scala-tools.org/repo-releases/com/twitter/chill-java/0.3.6/chill-java-0.3.6.pom
    Downloading: http://repo1.maven.org/maven2/com/twitter/chill-java/0.3.6/chill-java-0.3.6.pom
    Downloaded: http://repo1.maven.org/maven2/com/twitter/chill-java/0.3.6/chill-java-0.3.6.pom (2 KB at 3.8 KB/sec)
    Downloading: http://repo.akka.io/releases/org/spark-project/akka/akka-remote_2.10/2.2.3-shaded-protobuf/akka-remote_2.10-2.2.3-shaded-protobuf.pom
    Downloading: http://scala-tools.org/repo-releases/org/spark-project/akka/akka-remote_2.10/2.2.3-shaded-protobuf/akka-remote_2.10-2.2.3-shaded-protobuf.pom
    Downloading: http://repo1.maven.org/maven2/org/spark-project/akka/akka-remote_2.10/2.2.3-shaded-protobuf/akka-remote_2.10-2.2.3-shaded-protobuf.pom
    Downloaded: http://repo1.maven.org/maven2/org/spark-project/akka/akka-remote_2.10/2.2.3-shaded-protobuf/akka-remote_2.10-2.2.3-shaded-protobuf.pom (4 KB at 7.1 KB/sec)
    Downloading: http://repo.akka.io/releases/org/spark-project/akka/akka-actor_2.10/2.2.3-shaded-protobuf/akka-actor_2.10-2.2.3-shaded-protobuf.pom
    Downloading: http://scala-tools.org/repo-releases/org/spark-project/akka/akka-actor_2.10/2.2.3-shaded-protobuf/akka-actor_2.10-2.2.3-shaded-protobuf.pom
    Downloading: http://repo1.maven.org/maven2/org/spark-project/akka/akka-actor_2.10/2.2.3-shaded-protobuf/akka-actor_2.10-2.2.3-shaded-protobuf.pom
    Downloaded: http://repo1.maven.org/maven2/org/spark-project/akka/akka-actor_2.10/2.2.3-shaded-protobuf/akka-actor_2.10-2.2.3-shaded-protobuf.pom (2 KB at 3.7 KB/sec)
    Downloading: http://repo.akka.io/releases/com/typesafe/config/1.0.2/config-1.0.2.pom
    [WARNING] The POM for com.typesafe:config:jar:1.0.2 is missing, no dependency information available
    Downloading: http://repo.akka.io/releases/org/spark-project/protobuf/protobuf-java/2.4.1-shaded/protobuf-java-2.4.1-shaded.pom
    [WARNING] The POM for org.spark-project.protobuf:protobuf-java:jar:2.4.1-shaded is missing, no dependency information available
    Downloading: http://repo.akka.io/releases/org/spark-project/akka/akka-slf4j_2.10/2.2.3-shaded-protobuf/akka-slf4j_2.10-2.2.3-shaded-protobuf.pom
    Downloading: http://scala-tools.org/repo-releases/org/spark-project/akka/akka-slf4j_2.10/2.2.3-shaded-protobuf/akka-slf4j_2.10-2.2.3-shaded-protobuf.pom
    Downloading: http://repo1.maven.org/maven2/org/spark-project/akka/akka-slf4j_2.10/2.2.3-shaded-protobuf/akka-slf4j_2.10-2.2.3-shaded-protobuf.pom
    Downloaded: http://repo1.maven.org/maven2/org/spark-project/akka/akka-slf4j_2.10/2.2.3-shaded-protobuf/akka-slf4j_2.10-2.2.3-shaded-protobuf.pom (3 KB at 4.7 KB/sec)
    Downloading: http://repo.akka.io/releases/colt/colt/1.2.0/colt-1.2.0.pom
    Downloading: http://scala-tools.org/repo-releases/colt/colt/1.2.0/colt-1.2.0.pom
    [WARNING] The POM for colt:colt:jar:1.2.0 is missing, no dependency information available
    Downloading: http://repo.akka.io/releases/org/apache/mesos/mesos/0.18.1/mesos-0.18.1.pom
    Downloading: http://scala-tools.org/repo-releases/org/apache/mesos/mesos/0.18.1/mesos-0.18.1.pom
    Downloading: http://repo1.maven.org/maven2/org/apache/mesos/mesos/0.18.1/mesos-0.18.1.pom
    Downloaded: http://repo1.maven.org/maven2/org/apache/mesos/mesos/0.18.1/mesos-0.18.1.pom (8 KB at 9.8 KB/sec)
    Downloading: http://repo.akka.io/releases/com/codahale/metrics/metrics-core/3.0.0/metrics-core-3.0.0.pom
    Downloading: http://scala-tools.org/repo-releases/com/codahale/metrics/metrics-core/3.0.0/metrics-core-3.0.0.pom
    Downloading: http://repo1.maven.org/maven2/com/codahale/metrics/metrics-core/3.0.0/metrics-core-3.0.0.pom
    Downloaded: http://repo1.maven.org/maven2/com/codahale/metrics/metrics-core/3.0.0/metrics-core-3.0.0.pom (845 B at 1.6 KB/sec)
    Downloading: http://repo.akka.io/releases/com/codahale/metrics/metrics-parent/3.0.0/metrics-parent-3.0.0.pom
    Downloading: http://scala-tools.org/repo-releases/com/codahale/metrics/metrics-parent/3.0.0/metrics-parent-3.0.0.pom
    Downloading: http://repo1.maven.org/maven2/com/codahale/metrics/metrics-parent/3.0.0/metrics-parent-3.0.0.pom
    Downloaded: http://repo1.maven.org/maven2/com/codahale/metrics/metrics-parent/3.0.0/metrics-parent-3.0.0.pom (10 KB at 4.8 KB/sec)
    Downloading: http://repo.akka.io/releases/com/codahale/metrics/metrics-jvm/3.0.0/metrics-jvm-3.0.0.pom
    Downloading: http://scala-tools.org/repo-releases/com/codahale/metrics/metrics-jvm/3.0.0/metrics-jvm-3.0.0.pom
    Downloading: http://repo1.maven.org/maven2/com/codahale/metrics/metrics-jvm/3.0.0/metrics-jvm-3.0.0.pom
    Downloaded: http://repo1.maven.org/maven2/com/codahale/metrics/metrics-jvm/3.0.0/metrics-jvm-3.0.0.pom (965 B at 1.8 KB/sec)
    Downloading: http://repo.akka.io/releases/com/codahale/metrics/metrics-json/3.0.0/metrics-json-3.0.0.pom
    Downloading: http://scala-tools.org/repo-releases/com/codahale/metrics/metrics-json/3.0.0/metrics-json-3.0.0.pom
    Downloading: http://repo1.maven.org/maven2/com/codahale/metrics/metrics-json/3.0.0/metrics-json-3.0.0.pom
    Downloaded: http://repo1.maven.org/maven2/com/codahale/metrics/metrics-json/3.0.0/metrics-json-3.0.0.pom (2 KB at 2.6 KB/sec)
    Downloading: http://repo.akka.io/releases/com/fasterxml/jackson/core/jackson-databind/2.2.2/jackson-databind-2.2.2.pom
    Downloading: http://scala-tools.org/repo-releases/com/fasterxml/jackson/core/jackson-databind/2.2.2/jackson-databind-2.2.2.pom
    Downloading: http://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.2.2/jackson-databind-2.2.2.pom
    Downloaded: http://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.2.2/jackson-databind-2.2.2.pom (6 KB at 10.0 KB/sec)
    Downloading: http://repo.akka.io/releases/com/fasterxml/jackson/core/jackson-annotations/2.2.2/jackson-annotations-2.2.2.pom
    Downloading: http://scala-tools.org/repo-releases/com/fasterxml/jackson/core/jackson-annotations/2.2.2/jackson-annotations-2.2.2.pom
    Downloading: http://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.2.2/jackson-annotations-2.2.2.pom
    Downloaded: http://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.2.2/jackson-annotations-2.2.2.pom (2 KB at 2.4 KB/sec)
    Downloading: http://repo.akka.io/releases/com/fasterxml/jackson/core/jackson-core/2.2.2/jackson-core-2.2.2.pom
    Downloading: http://scala-tools.org/repo-releases/com/fasterxml/jackson/core/jackson-core/2.2.2/jackson-core-2.2.2.pom
    Downloading: http://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.2.2/jackson-core-2.2.2.pom
    Downloaded: http://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.2.2/jackson-core-2.2.2.pom (6 KB at 11.2 KB/sec)
    Downloading: http://repo.akka.io/releases/com/codahale/metrics/metrics-graphite/3.0.0/metrics-graphite-3.0.0.pom
    Downloading: http://scala-tools.org/repo-releases/com/codahale/metrics/metrics-graphite/3.0.0/metrics-graphite-3.0.0.pom
    Downloading: http://repo1.maven.org/maven2/com/codahale/metrics/metrics-graphite/3.0.0/metrics-graphite-3.0.0.pom
    Downloaded: http://repo1.maven.org/maven2/com/codahale/metrics/metrics-graphite/3.0.0/metrics-graphite-3.0.0.pom (936 B at 1.8 KB/sec)
    Downloading: http://repo.akka.io/releases/org/tachyonproject/tachyon-client/0.5.0/tachyon-client-0.5.0.pom
    Downloading: http://scala-tools.org/repo-releases/org/tachyonproject/tachyon-client/0.5.0/tachyon-client-0.5.0.pom
    Downloading: http://repo1.maven.org/maven2/org/tachyonproject/tachyon-client/0.5.0/tachyon-client-0.5.0.pom
    Downloaded: http://repo1.maven.org/maven2/org/tachyonproject/tachyon-client/0.5.0/tachyon-client-0.5.0.pom (4 KB at 6.5 KB/sec)
    Downloading: http://repo.akka.io/releases/org/tachyonproject/tachyon-parent/0.5.0/tachyon-parent-0.5.0.pom
    Downloading: http://scala-tools.org/repo-releases/org/tachyonproject/tachyon-parent/0.5.0/tachyon-parent-0.5.0.pom
    Downloading: http://repo1.maven.org/maven2/org/tachyonproject/tachyon-parent/0.5.0/tachyon-parent-0.5.0.pom
    Downloaded: http://repo1.maven.org/maven2/org/tachyonproject/tachyon-parent/0.5.0/tachyon-parent-0.5.0.pom (5 KB at 9.6 KB/sec)
    Downloading: http://repo.akka.io/releases/org/tachyonproject/tachyon/0.5.0/tachyon-0.5.0.pom
    Downloading: http://scala-tools.org/repo-releases/org/tachyonproject/tachyon/0.5.0/tachyon-0.5.0.pom
    Downloading: http://repo1.maven.org/maven2/org/tachyonproject/tachyon/0.5.0/tachyon-0.5.0.pom
    Downloaded: http://repo1.maven.org/maven2/org/tachyonproject/tachyon/0.5.0/tachyon-0.5.0.pom (14 KB at 17.5 KB/sec)
    Downloading: http://repo.akka.io/releases/org/slf4j/slf4j-log4j12/1.7.2/slf4j-log4j12-1.7.2.pom
    Downloading: http://scala-tools.org/repo-releases/org/slf4j/slf4j-log4j12/1.7.2/slf4j-log4j12-1.7.2.pom
    Downloading: http://repo1.maven.org/maven2/org/slf4j/slf4j-log4j12/1.7.2/slf4j-log4j12-1.7.2.pom
    Downloaded: http://repo1.maven.org/maven2/org/slf4j/slf4j-log4j12/1.7.2/slf4j-log4j12-1.7.2.pom (2 KB at 3.1 KB/sec)
    Downloading: http://repo.akka.io/releases/com/fasterxml/jackson/core/jackson-databind/2.3.0/jackson-databind-2.3.0.pom
    Downloading: http://scala-tools.org/repo-releases/com/fasterxml/jackson/core/jackson-databind/2.3.0/jackson-databind-2.3.0.pom
    Downloading: http://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.3.0/jackson-databind-2.3.0.pom
    Downloaded: http://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.3.0/jackson-databind-2.3.0.pom (6 KB at 10.0 KB/sec)
    Downloading: http://repo.akka.io/releases/com/fasterxml/jackson/core/jackson-core/2.3.0/jackson-core-2.3.0.pom
    Downloading: http://scala-tools.org/repo-releases/com/fasterxml/jackson/core/jackson-core/2.3.0/jackson-core-2.3.0.pom
    Downloading: http://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.3.0/jackson-core-2.3.0.pom
    Downloaded: http://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.3.0/jackson-core-2.3.0.pom (6 KB at 8.3 KB/sec)
    Downloading: http://repo.akka.io/releases/org/spark-project/pyrolite/2.0.1/pyrolite-2.0.1.pom
    Downloading: http://scala-tools.org/repo-releases/org/spark-project/pyrolite/2.0.1/pyrolite-2.0.1.pom
    Downloading: http://repo1.maven.org/maven2/org/spark-project/pyrolite/2.0.1/pyrolite-2.0.1.pom
    Downloaded: http://repo1.maven.org/maven2/org/spark-project/pyrolite/2.0.1/pyrolite-2.0.1.pom (2 KB at 1.8 KB/sec)
    Downloading: http://repo.akka.io/releases/com/twitter/parquet-avro/1.4.3/parquet-avro-1.4.3.jar
    Downloading: http://repo.akka.io/releases/com/twitter/parquet-column/1.4.3/parquet-column-1.4.3.jar
    Downloading: http://repo.akka.io/releases/com/twitter/parquet-hadoop/1.4.3/parquet-hadoop-1.4.3.jar
    Downloading: http://repo.akka.io/releases/com/twitter/parquet-format/2.0.0/parquet-format-2.0.0.jar
    Downloading: http://repo.akka.io/releases/com/twitter/parquet-jackson/1.4.3/parquet-jackson-1.4.3.jar
    Downloading: http://repo.akka.io/releases/org/bdgenomics/bdg-formats/bdg-formats/0.2.0/bdg-formats-0.2.0.jar
    Downloading: http://repo.akka.io/releases/org/bdgenomics/adam/adam-core/0.14.0/adam-core-0.14.0.jar
    Downloading: http://repo.akka.io/releases/org/scoverage/scalac-scoverage-plugin_2.10/0.99.2/scalac-scoverage-plugin_2.10-0.99.2.jar
    Downloading: http://repo.akka.io/releases/org/slf4j/slf4j-log4j12/1.7.5/slf4j-log4j12-1.7.5.jar
    Downloading: http://scala-tools.org/repo-releases/com/twitter/parquet-avro/1.4.3/parquet-avro-1.4.3.jar
    Downloading: http://scala-tools.org/repo-releases/com/twitter/parquet-column/1.4.3/parquet-column-1.4.3.jar
    Downloading: http://scala-tools.org/repo-releases/com/twitter/parquet-hadoop/1.4.3/parquet-hadoop-1.4.3.jar
    Downloading: http://scala-tools.org/repo-releases/com/twitter/parquet-jackson/1.4.3/parquet-jackson-1.4.3.jar
    Downloading: http://scala-tools.org/repo-releases/com/twitter/parquet-format/2.0.0/parquet-format-2.0.0.jar
    Downloading: http://scala-tools.org/repo-releases/org/bdgenomics/bdg-formats/bdg-formats/0.2.0/bdg-formats-0.2.0.jar
    Downloading: http://scala-tools.org/repo-releases/org/bdgenomics/adam/adam-core/0.14.0/adam-core-0.14.0.jar
    Downloading: http://scala-tools.org/repo-releases/org/scoverage/scalac-scoverage-plugin_2.10/0.99.2/scalac-scoverage-plugin_2.10-0.99.2.jar
    Downloading: http://scala-tools.org/repo-releases/org/slf4j/slf4j-log4j12/1.7.5/slf4j-log4j12-1.7.5.jar
    Downloading: http://repo1.maven.org/maven2/com/twitter/parquet-avro/1.4.3/parquet-avro-1.4.3.jar
    Downloading: http://repo1.maven.org/maven2/com/twitter/parquet-column/1.4.3/parquet-column-1.4.3.jar
    Downloading: http://repo1.maven.org/maven2/com/twitter/parquet-hadoop/1.4.3/parquet-hadoop-1.4.3.jar
    Downloading: http://repo1.maven.org/maven2/com/twitter/parquet-jackson/1.4.3/parquet-jackson-1.4.3.jar
    Downloading: http://repo1.maven.org/maven2/com/twitter/parquet-format/2.0.0/parquet-format-2.0.0.jar
    Downloaded: http://repo1.maven.org/maven2/com/twitter/parquet-avro/1.4.3/parquet-avro-1.4.3.jar (41 KB at 27.5 KB/sec)
    Downloading: http://repo1.maven.org/maven2/org/bdgenomics/bdg-formats/bdg-formats/0.2.0/bdg-formats-0.2.0.jar
    Downloaded: http://repo1.maven.org/maven2/org/bdgenomics/bdg-formats/bdg-formats/0.2.0/bdg-formats-0.2.0.jar (102 KB at 34.0 KB/sec)
    Downloading: http://repo1.maven.org/maven2/org/bdgenomics/adam/adam-core/0.14.0/adam-core-0.14.0.jar
    Downloaded: http://repo1.maven.org/maven2/com/twitter/parquet-hadoop/1.4.3/parquet-hadoop-1.4.3.jar (154 KB at 10.7 KB/sec)
    Downloading: http://repo1.maven.org/maven2/org/scoverage/scalac-scoverage-plugin_2.10/0.99.2/scalac-scoverage-plugin_2.10-0.99.2.jar
    Downloaded: http://repo1.maven.org/maven2/com/twitter/parquet-format/2.0.0/parquet-format-2.0.0.jar (461 KB at 30.9 KB/sec)
    Downloading: http://repo1.maven.org/maven2/org/slf4j/slf4j-log4j12/1.7.5/slf4j-log4j12-1.7.5.jar
    Downloaded: http://repo1.maven.org/maven2/org/slf4j/slf4j-log4j12/1.7.5/slf4j-log4j12-1.7.5.jar (9 KB at 5.5 KB/sec)
    Downloaded: http://repo1.maven.org/maven2/com/twitter/parquet-column/1.4.3/parquet-column-1.4.3.jar (708 KB at 36.0 KB/sec)
    Downloaded: http://repo1.maven.org/maven2/org/scoverage/scalac-scoverage-plugin_2.10/0.99.2/scalac-scoverage-plugin_2.10-0.99.2.jar (210 KB at 31.8 KB/sec)
    Downloaded: http://repo1.maven.org/maven2/com/twitter/parquet-jackson/1.4.3/parquet-jackson-1.4.3.jar (1005 KB at 26.5 KB/sec)
    Downloaded: http://repo1.maven.org/maven2/org/bdgenomics/adam/adam-core/0.14.0/adam-core-0.14.0.jar (2074 KB at 45.0 KB/sec)
    [INFO] 
    [INFO] --- avro-maven-plugin:1.7.6:schema (default) @ cloud-scale-bwamem ---
    [INFO] 
    [INFO] --- avro-maven-plugin:1.7.6:protocol (default) @ cloud-scale-bwamem ---
    [INFO] 
    [INFO] --- avro-maven-plugin:1.7.6:idl-protocol (default) @ cloud-scale-bwamem ---
    [INFO] 
    [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ cloud-scale-bwamem ---
    [debug] execute contextualize
    [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent!
    [INFO] skip non existing resourceDirectory D:\all\idea\cloud-scale-bwamem-0.2.1\src\main\resources
    [INFO] 
    [INFO] --- maven-scala-plugin:2.15.2:compile (default) @ cloud-scale-bwamem ---
    [INFO] Checking for multiple versions of scala
    [WARNING]  Expected all dependencies to require Scala version: 2.10.4
    [WARNING]  cs.ucla.edu:cloud-scale-bwamem:0.2.0 requires scala version: 2.10.4
    [WARNING]  org.scoverage:scalac-scoverage-plugin_2.10:0.99.2 requires scala version: 2.10.4
    [WARNING]  org.bdgenomics.adam:adam-core:0.14.0 requires scala version: 2.10.3
    [WARNING] Multiple versions of scala libraries detected!
    [INFO] includes = [**/*.scala,**/*.java,]
    [INFO] excludes = []
    [INFO] D:\all\idea\cloud-scale-bwamem-0.2.1\src\main\java:-1: info: compiling
    [INFO] D:\all\idea\cloud-scale-bwamem-0.2.1\src\main\scala:-1: info: compiling
    [INFO] Compiling 77 source files to D:\all\idea\cloud-scale-bwamem-0.2.1\target\classes at 1464961627035
    [WARNING] warning: there were 22 deprecation warning(s); re-run with -deprecation for details
    [WARNING] warning: there were 1 feature warning(s); re-run with -feature for details
    [WARNING] two warnings found
    [INFO] prepare-compile in 0 s
    [INFO] compile in 88 s
    [INFO] 
    [INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ cloud-scale-bwamem ---
    [INFO] Changes detected - recompiling the module!
    [WARNING] File encoding has not been set, using platform encoding UTF-8, i.e. build is platform dependent!
    [INFO] Compiling 8 source files to D:\all\idea\cloud-scale-bwamem-0.2.1\target\classes
    [INFO] 
    [INFO] --- maven-scala-plugin:2.15.2:compile (compile) @ cloud-scale-bwamem ---
    [INFO] Checking for multiple versions of scala
    [WARNING]  Expected all dependencies to require Scala version: 2.10.4
    [WARNING]  cs.ucla.edu:cloud-scale-bwamem:0.2.0 requires scala version: 2.10.4
    [WARNING]  org.scoverage:scalac-scoverage-plugin_2.10:0.99.2 requires scala version: 2.10.4
    [WARNING]  org.bdgenomics.adam:adam-core:0.14.0 requires scala version: 2.10.3
    [WARNING] Multiple versions of scala libraries detected!
    [INFO] includes = [**/*.scala,**/*.java,]
    [INFO] excludes = []
    [INFO] Nothing to compile - all classes are up to date
    [INFO] ------------------------------------------------------------------------
    [INFO] BUILD SUCCESS
    [INFO] ------------------------------------------------------------------------
    [INFO] Total time: 4:36.543s
    [INFO] Finished at: Fri Jun 03 21:48:51 CST 2016
    [INFO] Final Memory: 34M/380M
    [INFO] ------------------------------------------------------------------------

    Process finished with exit code 0

参考

【1】https://github.com/xubo245/AdamLearning
【2】https://github.com/bigdatagenomics/adam/ 
【3】https://github.com/xubo245/SparkLearning
【4】http://spark.apache.org

研究成果：

【1】 [BIBM] Bo Xu, Changlong Li, Hang Zhuang, Jiali Wang, Qingfeng Wang, Chao Wang, and Xuehai Zhou, "Distributed Gene Clinical Decision Support System Based on Cloud Computing", in IEEE International Conference on Bioinformatics and Biomedicine. (BIBM 2017, CCF B)
【2】 [IEEE CLOUD] Bo Xu, Changlong Li, Hang Zhuang, Jiali Wang, Qingfeng Wang, Xuehai Zhou. Efficient Distributed Smith-Waterman Algorithm Based on Apache Spark (CLOUD 2017, CCF-C).
【3】 [CCGrid] Bo Xu, Changlong Li, Hang Zhuang, Jiali Wang, Qingfeng Wang, Jinhong Zhou, Xuehai Zhou. DSA: Scalable Distributed Sequence Alignment System Using SIMD Instructions. (CCGrid 2017, CCF-C).
【4】more: https://github.com/xubo245/Publications

Help

If you have any questions or suggestions, please write it in the issue of this project or send an e-mail to me: xubo245@mail.ustc.edu.cn
Wechat: xu601450868
QQ: 601450868
KeepLearningBigData
关注
专栏目录
全网详细IDEA安装Maven，解决The plugin org.codehaus.mojo:flatten-maven-plugin:1.5.0 requires Maven version 3.5
念兮为美
12-06 3285
全网超详细的 IDEA 安装Maven，Failed to execute goal org.codehaus.mojo:flatten-maven-plugin:1.5.0:clean (flatten.clean) on project yudao-dependencies: The plugin org.codehaus.mojo:flatten-maven-plugin:1.5.0 requires Maven version 3.5.4 -> [Help 1]
idea右边找不到maven窗口不见了的多种解决方法
念兮为美
04-15 2万+
idea右边找不到maven窗口不见了的多种解决方法
基因数据处理44之cloud-scale-bwamem安装
Keep Learning
06-02 1195
cloud-scale-bwamem是在spark等云环境上实现bwa-mem算法，加速对全基因组匹配的处理 1.下载：git clone https://github.com/ytchen0323/cloud-scale-bwamem.git2.编译：mvn clean package3.编译成功：[INFO] -----------------------------------------
maven-compiler-plugin 插件版本信息错误提示解决办法
Tiger的专栏
07-25 1万+
1.maven-compiler-plugin插件版本信息警告提示 [WARNING] [WARNING] Some problems were encountered while building the effective model for com.mimhope.jettycode:JettyCode:war:0.0.1-SNAPSHOT [WARNING] 'build.plugi...
【error】maven打包报错，Failed to execute goal org.apache.maven.plugins，idea报错找不到符号
想去码头整点儿薯条儿~
12-22 5759
【error】maven打包报错，Failed to execute goal org.apache.maven.plugins，idea报错找不到符号
Maven入门---如何在idea中配置Maven
weixin_46816383的博客
03-15 1万+
Maven入门---如何在idea中配置Maven一、下载Maven二、配置环境变量三、配置本地仓库四、配置镜像五、配置统一的JDK六、创建Maven项目七、Maven项目变为Web项目 一、下载Maven Maven官网：http://maven.apache.org/download.cgi 或者其他下载渠道 建议在D盘或者其他盘新建目录（D:/maven）用于存放Maven 二、配置环境变量 此电脑右键→属性→环境变量→添加环境变量→编辑系统变量中的path添加maven的bin路径，具体如下：
eclipse/idea maven plugin 插件 安装 和 配置
Yuliiiiiiiii的博客
08-11 7369
1、maven安装配置： 1、本机安装maven maven软件的下载地址http://maven.apache.org/download.cgi 2、配置环境变量：将下载回来的包解压到任意地址，我的路径是D:\installed\apache-maven-3.3.9 3.新建环境变量MAVEN_HOME 指向D:\installed\apache-maven-3.3.9 4.在path尾部添...
IDEA maven的安装与配置（超详细）
热门推荐
m0_56183421的博客
06-04 4万+
为什么要学maven、maven的核心思想、他能干什么、以及超详细的maven安装配置过程，并在idea中配置本地maven
maven日常问题
阿呆的专栏
01-09 3538
问题 maven打包报错如下 ‘dependencyManagement.dependencies.dependency.systemPath’ for jdk.tools:jdk.tools:jar must specify an absolute path but is ${JAVA_HOME}/lib/tools.jar @ com.....mservice-two:parent:2.0.3-SNAPSHOT, /Users/gallant/Documents/git_repo/.../mservic
记mybatis-generator生成实体类继承基类的一个大坑
idchangyifan的博客
11-01 1万+
我的天哪，一个简单的问题，搞死我了。 在我们用mybatis-generator生成实体类的时候，会希望这些实体类继承自一个基类，这个基类包含了实体类共同的属性，如uuid，createdate等信息。 问题来了，直接在generatorConfig中添加rootclass如图所示是行不通的 这只会让你得到一条warning信息： Root class com.orchard.Entity ca...
向Maven的本地库中添加jar文件
weixin_33720078的博客
11-30 127
有时我们要用的 maven 依赖项在官方repo库中找不到，然而我们从其他渠道获得了依赖项中的所有jar文件，本文记录了如何向本地库添加jar文件。 从复杂到简单，有三种方法： 使用 maven 的仓库管理器（例如Nexus）来架设一个本地仓库服务器 使用指令 mvn install:install-file 将jar文件安装到本地仓库 通过项目pom配置文件引入 第一种方法有利于团队开发，内容...
‘artifactId‘ with value ‘xxx‘ does not match a valid id pattern.
最新发布
卡塔丽娜的博客
07-15 275
'artifactId' with value 'xxx' does not match a valid id pattern.报错如何解决？
BWA的简单安装和使用
liduo159357的博客
03-20 1762
BWA，即Burrows-Wheeler-Alignment Tool。BWA 是一种能够将差异度较小的序列比对到一个较大的参考基因组上的软件包。功能：短系列比对，将测序得到的短片段在回帖到基因组上，这个过程也被称为mapping。mapping的结果包含了所有的信息，后续所有的分析都是基于这个mapping的结果。如果想分析二代测序的数据，就必须进行短序列比对。它由三种算法BWA-backtrack：比对 Illumina （二代测序）的序列，reads长度最长100bp。
CS0161号错误是什么
Hoxily的窝窝
02-22 6442
原文地址：https://support.unity3d.com/hc/en-us/articles/207479673-What-is-CS0161-症状当尝试进入Play模式时，我得到了如下错误： error CS0161: `__’: not all code paths return a value 原因引起CS0161错误的原因是，一个拥有返回类型的方法在一个或多个出口处未返回值。下面
BWA安装过程
weixin_45963508的博客
09-23 4520
BWA，即Burrows-Wheeler-Alignment Tool。BWA 是一种能够将差异度较小的序列比对到一个较大的参考基因组上的软件包。 先获取bwa的安装包，可以直接去github上下载，https://github.com/lh3/bwa。也可以使用git clone命令直接拷贝到本地。 进入bwa文件，直接make，等待安装完成。 安装完成后，输入bwa，就能查看帮助信息。 ...
scala创建maven项目 常用pom文件
我的博客
01-04 4139
 注意自己scala的版本与集群版本是否匹配  不匹配会报错 我的是scala 2.11.8   hadoop2.7.2  spark-2.1.1 <?xml version="1.0" encoding="UTF-8"?> <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http...
springcloud进行maven打包时候出现警告
掘金者说
08-06 4083
问题： [WARNING] [WARNING] Some problems were encountered while building the effective model for com.schoolmall.micro.server:cloud-monitor-center:jar:0.0.1-SNAPSHOT [WARNING] 'dependencyManagement.dep...
评论
添加红包

请填写红包祝福语或标题

个

红包个数最小为10个

元

红包金额最低5元

当前余额3.43元 前往充值 >
需支付：10.00元
成就一亿技术人!
领取后你会自动成为博主和红包主的粉丝 规则
hope_wisdom
发出的红包
实付元
使用余额支付
点击重新获取
扫码支付
钱包余额 0

抵扣说明：

1.余额是钱包充值的虚拟货币，按照1:1的比例进行支付金额的抵扣。
2.余额无法直接购买下载，可以购买VIP、付费专栏及课程。

余额充值