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soil traits with k-means cluster
cluster with k-means To select one traits in one cluster, simplify the gwas result 1. calculate the Pearson correlation coefficient by using R and plot library(pheatmap) data<-read.table("pro_alti_rm.cor",header=T,row.names = 1) pdf(file="pro_soil.cor.p原创 2021-02-24 01:57:01 · 118 阅读 · 0 评论 -
cluster soil traits
Find a suitable cluster method In GWAS analysis, both highly positve and negative related traits will return us the similar results, such as below (a vs b: 0.996, a vs c: -0.976),what we want to do is randomly remain one from (a, b, c). Trait “a”: Trait “b原创 2021-02-25 22:47:37 · 170 阅读 · 0 评论