Are you trying to import a non-Eclipse based Java project into Eclipse?（废话来的）
You find a lot of tips in the internet which tell you that you should create a new Java Project and then use the “Create project from existing source” option.
Unfortunately this option does not exists. To my knowlegge the correct (and unfortunately a bit complex way) is to create a nwe Java project, select the project, right-click on it and select Import -> File System.
On the following dialog you can select the directory from which you want to import and also if existing resources should be overriden.
I hope this helps.
Google App Engine with Java
you also need to set the output path (bin folder)of the project to “projectname/war/WEB-INF/classes”.