pku 3356 AGTC

AGTC
Time Limit:1000MS  Memory Limit:65536K
Total Submit:1285 Accepted:395

Description

 

Input

 

Output

 

Sample Input

 

Sample Output

4
 
 
#include  < iostream >
#include 
< string >
using   namespace  std;
int  matrix[ 1024 ][ 1024 ];
int  min( int  a, int  b, int  c)
{
    
int res;
    res
=a<=b?a:b;
    
if(res>=c)  res=c;
    
return res;
}

int  main()
{
    
int i,j;
    
int len1,len2;
    
string str1,str2;
    
while(cin>>len1)
    
{
        cin
>>str1;
        cin
>>len2>>str2;
        
for(i=0;i<=len1;i++)
            matrix[i][
0]=i;
        
for(j=0;j<=len2;j++)
            matrix[
0][j]=j;
        
        
for(i=1;i<=len1;i++)
            
for(j=1;j<=len2;j++)
            
{
                
if(str1[i-1]==str2[j-1])
                    matrix[i][j]
=min(matrix[i-1][j-1],matrix[i-1][j]+1,matrix[i][j-1]+1);
                
else 
                    matrix[i][j]
=min(matrix[i-1][j-1]+1,matrix[i-1][j]+1,matrix[i][j-1]+1);
            }

            cout
<<matrix[len1][len2]<<endl;
    }

    
return 0;
}

10 AGTCTGACGC
11 AGTAAGTAGGC

An integer representing the minimum number of possible operations to transform any string x into a string y.

The input consists of the strings x and y prefixed by their respective lengths, which are within 1000.

Let x and y be two strings over some finite alphabet A. We would like to transform x into y allowing only operations given below:

 

  • Deletion: a letter in x is missing in y at a corresponding position.
  • Insertion: a letter in y is missing in x at a corresponding position.
  • Change: letters at corresponding positions are distinct

 

Certainly, we would like to minimize the number of all possible operations.

Illustration

 

A G T A A G T * A G G C

| | | | | | |
A G T * C * T G A C G C

 

Deletion: * in the bottom line
Insertion: * in the top line
Change: when the letters at the top and bottom are distinct

This tells us that to transform x = AGTCTGACGC into y = AGTAAGTAGGC we would be required to perform 5 operations (2 changes, 2 deletions and 1 insertion). If we want to minimize the number operations, we should do it like

 

A  G  T  A  A  G  T  A  G  G  C

| | | | | | |
A G T C T G * A C G C

 

and 4 moves would be required (3 changes and 1 deletion).

In this problem we would always consider strings x and y to be fixed, such that the number of letters in x is m and the number of letters in y is n where nm.

Assign 1 as the cost of an operation performed. Otherwise, assign 0 if there is no operation performed.

Write a program that would minimize the number of possible operations to transform any string x into a string y.

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