Install Softwares

lxqlxq21

于 2016-06-07 05:46:17 发布

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分类专栏： MRI

本文链接：https://blog.csdn.net/lxqlxq21/article/details/51601061

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本文档详细介绍了如何安装和使用一系列脑影像处理工具，包括BEaST、ALFA、3dSkullStrip等。针对每个工具，提供了安装链接、可能出现的错误及解决方法和基本用法。

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Do it with for loop:

for sub in *; 
    do echo $sub; 
    3dSkullStrip -input ${sub}/T1_${sub}_S0001.nii -prefix ${sub}/T1_${sub}_S0001_3DSS.nii -mask_vol; 
done

for sub in *; 
    do echo $sub; 
    3dSkullStrip -input ${sub}/${sub}_3T_T1w_MPR1.nii -prefix ${sub}/${sub}_3T_T1w_MPR1_3DSS.nii -mask_vol;
done

for sub in *; 
    do echo $sub; 
    3dSkullStrip -input ${sub}/T1_${sub}_V2.nii -prefix ${sub}/T1_${sub}_V2_3DSS.nii -mask_vol
done

BEaST

*Done? Need to test.
- minc库位置 /opt/minc-itk4/lib
- beast-library-1.1位置 /opt/minc-itk4/share/beast-library-1.1

Usage:

1. $ source /opt/minc-itk4/minc-toolkit-config.sh
2. PATH=$PATH:/opt/minc-itk4/bin

nii2mnc
/opt/minc/bin/mincbeast /opt/minc/share/beast-library-1.0/ ~/Desktop/test.mnc ~/Desktop/output.mnc

return error

ERROR! Mask dimension does not match image dimension!

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