安装生信软件Trinity
使用conda创建一个新环境
conda create -n Trinity
conda activate Trinity
安装Trinity运行需要的依赖软件
conda install jellyfish bowtie2 salmon samtools
下载Trinity软件包
wget -c https://github.com/trinityrnaseq/trinityrnaseq/releases/download/Trinity-v2.15.1/trinityrnaseq-v2.15.1.FULL_with_extendedTestData.tar.gz
tar -zxvf trinityrnaseq-v2.15.1.FULL_with_extendedTestData.tar.gz
cd trinityrnaseq-v2.15.1
make
测试运行是否成功
cd ./sample_data/test_Trinity_Assembly
vim ~/.bashrc
export TRINITY_HOME=具体位置/trinityrnaseq-v2.15.1
source ~/.bashrc
bash runMe.sh