自组织映射(Self-organizing Maps,SOM)算法是一种无监督学习方法,具有良好的自组织、可视化等特性,已经得到了广泛的应用和研究。具体原理参照这篇博客【机器学习笔记】自组织映射网络（SOM）
最近想用SOM算法对图像进行分类，然后尝试了一下。
1.数据集
百度图片爬取了三种植物的图片，剔除掉格式不正确的，剩下玫瑰153张、桃花157张、向日葵159张（训练集和测试集一样）。爬虫代码可以参考：我的另一篇博客
2.SOM tensorflow实现
参考原始代码Self-Organizing Maps with Google’s TensorFlow
3.图片预处理
filename: image.py
from PIL import Image
import os
import numpy as np
def img_process(file,size):
img = Image.open(file)
img_r1 = img.resize((size,size))
arr = np.asarray(img_r1)/127.5
arr -= 1.0
if arr.shape!=(size,size,3):
return False
# print(arr.shape)
return np.reshape(arr,(-1,))
def pretreat(path,mode='train',size=224):
train_data = []
filename_data = []
for parent,diranmes,filenames in os.walk(path):
for filename in filenames:
# os.rename(os.path.join(parent,filename),os.path.join(parent,os.path.split(parent)[-1]+filename))
try:
full_filename = os.path.join(parent,filename)
img_data = img_process(full_filename,size)
if img_data is not False:
train_data.append(img_data)
if mode == 'test':
filename_data.append(full_filename)
except Exception as e:
print(e)
if mode == 'train':
np.random.shuffle(train_data)
return np.array(train_data)
elif mode == 'test':
return np.array(train_data),filename_data
else:
raise Exception('no mode name {}'.format(mode))
1.将图片resize成（224,224,3）
2.将图reshape成（150528）
这样一来，每张图片就被压缩成了一个150528维的向量，丢进SOM分类器，进行分类训练。
4.训练
filename:main.py
from image import pretreat
import numpy as np
data_dim = 150528
def train():
features = pretreat(r'flower')
som = SOM(1, 3,data_dim, n_iterations=1000, alpha=0.1)
som.train(features)
som.save_weights('weights.npy')
def predict():
features, name_data = pretreat(r'flower', mode='test') #这里测试集和训练集一样
som = SOM(1, 3, data_dim, n_iterations=1000, alpha=0.1)
som.load_weights('weights.npy')
results = som.predict(features)
print(som.evaluate(name_data, results, ["桃花", "向日葵", "玫瑰"]))
迭代1000轮训练后，预测结果如下：
从训练结果可以看出，聚类效果并不好。应该是样本太少，而特征又稀疏（由像素点直接组成的特征）。
优化方案：
1.增加大量训练样本。
2.用CNN对图像进行特征提取。
事实上，如果选择方案一，则需要的样本可能是无穷大。那么，果断选择方案二。
VGG16特征提取。
下载vgg16的imgnet预训练参数，选择不带dense层的。因为如果带dense层会造成问题。若待分类样本在imgnet的1000个分类中，则结果就是vgg16的预测结果，可以直接选取最大值得index得到分类结果，聚类就显得毫无意义；若待分类样本不在这1000个分类中，则dense后的结果会有偏差。
参数下载地址(https://github.com/fchollet/deep-learning-models)
下载后模型默认保存在C盘的用户的.keras文件加下，例如weights_path = r'C:/Users/admin/.keras/models/'
filename: features.py
from vgg16 import VGG16
weights_path = r'C:/Users/admin/.keras/models/'
def get_feature(x):
model = VGG16()
model.load_weights(weights_path + 'vgg16_weights_tf_dim_ordering_tf_kernels_notop.h5')
features = model.predict(x, batch_size=32, verbose=1)
K.clear_session()
return features
filename:vgg16.py
from keras.models import Model
from keras.layers import Flatten
from keras.layers import Input
from keras.layers import Conv2D
from keras.layers import MaxPooling2D
def VGG16():
input_shape = (224,224,3)
img_input = Input(shape=input_shape)
x = Conv2D(64, (3, 3), activation='relu', padding='same', name='block1_conv1')(img_input)
x = Conv2D(64, (3, 3), activation='relu', padding='same', name='block1_conv2')(x)
x = MaxPooling2D((2, 2), strides=(2, 2), name='block1_pool')(x)
# Block 2
x = Conv2D(128, (3, 3), activation='relu', padding='same', name='block2_conv1')(x)
x = Conv2D(128, (3, 3), activation='relu', padding='same', name='block2_conv2')(x)
x = MaxPooling2D((2, 2), strides=(2, 2), name='block2_pool')(x)
# Block 3
x = Conv2D(256, (3, 3), activation='relu', padding='same', name='block3_conv1')(x)
x = Conv2D(256, (3, 3), activation='relu', padding='same', name='block3_conv2')(x)
x = Conv2D(256, (3, 3), activation='relu', padding='same', name='block3_conv3')(x)
x = MaxPooling2D((2, 2), strides=(2, 2), name='block3_pool')(x)
# Block 4
x = Conv2D(512, (3, 3), activation='relu', padding='same', name='block4_conv1')(x)
x = Conv2D(512, (3, 3), activation='relu', padding='same', name='block4_conv2')(x)
x = Conv2D(512, (3, 3), activation='relu', padding='same', name='block4_conv3')(x)
x = MaxPooling2D((2, 2), strides=(2, 2), name='block4_pool')(x)
# Block 5
x = Conv2D(512, (3, 3), activation='relu', padding='same', name='block5_conv1')(x)
x = Conv2D(512, (3, 3), activation='relu', padding='same', name='block5_conv2')(x)
x = Conv2D(512, (3, 3), activation='relu', padding='same', name='block5_conv3')(x)
x = MaxPooling2D((2, 2), strides=(2, 2), name='block5_pool')(x)
x = Flatten(name='flatten')(x)
model = Model(img_input,x)
return model
Dense降维
从vgg16的结构可以看出，最后一层卷积池化层的输出形状为（7,7，512），拉伸后为25088维向量，对于som分类这个向量维度还是太高了。我们在这个特征后面添加一层dense层，使其长度降维256，那么问题来了，Dense层的参数如何确定呢？
思路：
1.选择随机化的初始参数
2.通过训练调整
方案1很明显不行，否决了。那么如何通过训练调整dense层参数呢？想到了一个很巧妙的办法。看图：
图中第一个dense层的256维向量作为som神经网络的输入特征；第二个dense层输出一个3维向量，我们将som神经网络得到的胜出类别转化为独热码后作为该输出向量的真值，以此计算损失函数，反向调整两个dense层的参数。
整个som的包含了两层dense层，其输入是flatten后的250888维向量。
最后放上修改后的som.py
filename:som.py
import tensorflow as tf
import numpy as np
from tqdm import tqdm #一个进度条可以去掉
import re
inputshape = 25088
class SOM(object):
_trained = False
def __init__(self, m, n,dim, n_iterations=100, alpha=None, sigma=None):
self._m = m
self._n = n
self.dim = dim
if alpha is None:
alpha = 0.3
else:
alpha = float(alpha)
if sigma is None:
sigma = max(m, n) / 2.0
else:
sigma = float(sigma)
self._n_iterations = abs(int(n_iterations))
self._centroid_grid = np.zeros(shape=(m,n))
self.loaded_weights = None
##INITIALIZE GRAPH
self._graph = tf.Graph()
##POPULATE GRAPH WITH NECESSARY COMPONENTS
with self._graph.as_default():
self._weightage_vects = tf.Variable(tf.random_normal(
[m * n, dim],mean=0.5))
self._location_vects = tf.constant(np.array(
list(self._neuron_locations(m, n))))
self._vect_input = tf.placeholder("float", [inputshape]) #输入的图片特征向量
self._dense_input,self._output,self._dense_weights = self.dense(self._vect_input)
self._iter_input = tf.placeholder("float")
winner_index = tf.argmin(tf.sqrt(tf.reduce_sum(
tf.square(tf.subtract(self._weightage_vects, tf.stack(
[self._dense_input[0] for i in range(m * n)]))), 1)),
0)
slice_input = tf.pad(tf.reshape(winner_index, [1]),
np.array([[0, 1]]))
self.winner_loc = tf.reshape(tf.slice(self._location_vects, slice_input,
tf.constant(np.array([1, 2]),dtype=tf.int64)),
[2])#等于self._location_vects[winner_index]
print(self.winner_loc)
learning_rate_op = tf.subtract(1.0, tf.divide(self._iter_input,
self._n_iterations))
_alpha_op = learning_rate_op*alpha
_sigma_op = sigma*learning_rate_op
bmu_distance_squares = tf.reduce_sum(tf.square(tf.subtract(
self._location_vects, tf.stack(
[self.winner_loc for i in range(m * n)]))), 1)#领域距离的平方向量
neighbourhood_func = tf.exp(tf.negative(tf.divide(tf.cast(
bmu_distance_squares, "float32"), tf.square(_sigma_op))))
learning_rate_op = tf.multiply(_alpha_op, neighbourhood_func) #参数向量
learning_rate_multiplier = tf.stack([tf.tile(tf.slice(
learning_rate_op, np.array([i]), np.array([1])), [dim])
for i in range(m * n)])
weightage_delta = tf.multiply(
learning_rate_multiplier,
tf.subtract(tf.stack([self._dense_input[0] for i in range(m * n)]),
self._weightage_vects)) #增量矩阵
new_weightages_op = tf.add(self._weightage_vects,
weightage_delta)
cross_entropy = tf.nn.sparse_softmax_cross_entropy_with_logits(logits=self._output,labels=[self.winner_loc[0]+self.winner_loc[1]])
train_step = tf.train.ProximalGradientDescentOptimizer(learning_rate=_alpha_op).minimize(cross_entropy)
self._training_op = tf.group(tf.assign(self._weightage_vects,
new_weightages_op),train_step)
##INITIALIZE SESSION
self._sess = tf.Session()
##INITIALIZE VARIABLES
init_op = tf.global_variables_initializer()
self._sess.run(init_op)
def _neuron_locations(self, m, n):
for i in range(m):
for j in range(n):
yield np.array([i, j])
def train(self, input_vects):
for iter_no in tqdm(range(self._n_iterations)):
# Train with each vector one by one
for input_vect in input_vects:
# print(dense_vect.shape)
self._sess.run(self._training_op,
feed_dict={self._vect_input: input_vect,
self._iter_input: iter_no})
# Store a centroid grid for easy retrieval later on
self._locations = self._sess.run(self._location_vects)
self._centroid_grid = self._sess.run(self._weightage_vects)
self._dense_vects = self._sess.run(self._dense_weights)
self._trained = True
def save_weights(self,filename):
need_save = [self._dense_vects,self._centroid_grid]
if filename.endswith('npy'):
np.save(filename,need_save)
elif filename.endswith('txt'):
with open(filename,'w') as f:
f.write(str(need_save))
elif filename.endswith('json'):
import json
with open(filename,'w') as f:
json.dump(str(need_save),f)
else:
raise TypeError('cannot identify this type file')
def load_weights(self,filename):
if filename.endswith('npy'):
weigths = np.load(filename)
elif filename.endswith('txt'):
with open(filename,'r') as f:
weigths = eval(f.read())
elif filename.endswith('json'):
import json
with open(filename,'r') as f:
weigths = json.load(f)
else:
raise TypeError('cannot identify this type file')
self.loaded_weights = weigths
def predict(self,input_vects):
if self.loaded_weights is None:
raise RuntimeError('the weights not loaded')
to_return = []
locations =list(self._neuron_locations(self._m,self._n))
dense_vects = np.dot(input_vects,self.loaded_weights[0])+0.1
for vect in dense_vects:
min_index = min([i for i in range(len(self.loaded_weights[1]))],
key=lambda x: np.linalg.norm(vect - self.loaded_weights[1][x]))
to_return.append(locations[min_index])
return to_return
def evaluate(self,name_data,predict_data,classes):
analysis = {}
for i in range(self._m * self._n):
each_class = {}
for clas in set(classes):
each_class[clas] = 0
analysis[i] = each_class
for name, result in zip(name_data, predict_data):
idx = int(result[0]*self._n+result[1])
analysis[idx][re.search("|".join(classes), name).group()] += 1
score = {}
for key, value in analysis.items():
max_item = max(value.items(), key=lambda x: x[1])
score[key] = {max_item[0]: max_item[1] / sum(value.values())}
return analysis,score
def dense(self,inputs_vect):
inputs_vect = tf.expand_dims(inputs_vect,axis=0)
w1 = tf.Variable(tf.random_normal([tf.shape(inputs_vect)[1], self.dim]))
b1 = tf.constant(0.1,shape=[self.dim])
z1 = tf.matmul(inputs_vect,w1)+b1
a1 = tf.nn.relu(z1)
w2 = tf.Variable(tf.random_normal([self.dim, self._m*self._n]))
b2 = tf.constant(0.1,shape=[self._m*self._n])
z2 = tf.matmul(a1,w2)+b2
return a1,z2,w1
迭代1000轮，放上结果图
可见，分类效果已经初步达到。后期提高效果可以选择更好的CNN模型提取特征，或者多个CNN模型做特征融合。适当的调整学习率和迭代轮次，应该可以进一步提升分类结果。
好了，som图像分类介绍到这里，觉得有用的话，点个赞再走吧。
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