NETCDF C and FORTRAN 4.2 安装笔记

目录

步骤一、安装ifort编译器

步骤二、安装zlib

步骤三、安装hdf5

步骤四、安装netcdf-c-4.2

步骤五、安装netcdf-fortran-4.2

步骤六、设置环境变量

REFFERENCES

Intel® oneAPI Toolkits Installation Guide for Linux* OS:REFFERENCES

---

将安装过程遇到的主要问题记在前面，越早的版本坑越多，使新不使旧，使旧令人肝肠乱┭┮﹏┭┮

• ifort的环境变量设置：source /opt/intel/parallel_studio_xe_2020.1.102/bin/psxevars.sh intel64
• hdf5安装中，sudo make check install 步骤加上-i选项可解决testh5dump.sh.chkexe错误
• netcdf-fortran-4.2安装除了需要打补丁之外，最好使用普通用户模式
• 遇到安装错误，若其他人的解决方案都无法生效，可以先试下回退整个安装过程，重新解压。

步骤一、安装ifort编译器

***以YUM安装工具为例。如有安装过其他版本的ifort，请先卸载！

rpm -qa | grep intel | awk '{print "yum remove -y",$1}' > uninstall.sh

查看uninstall.sh文件，删除其中不以intel开头的包。然后用root权限执行该脚本即可。

1、作为普通用户在/temp 目录中创建 YUM (DNF) repo 文件：

tee > /tmp/oneAPI.repo << EOF [oneAPI] name=Intel® oneAPI repository baseurl=https://yum.repos.intel.com/oneapi enabled=1 gpgcheck=1 repo_gpgcheck=1 gpgkey=https://yum.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB EOF

2、移动新创建的oneAPI.repo文件到 YUM/DNF 配置目录：

sudo mv /tmp/oneAPI.repo /etc/yum.repos.d

3、在某些情况下，rpm 可能需要通过以下方式显式导入密钥:

rpm --import https://yum.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB

4、更新源，使用以下命令安装所需的包(示例程序安装的是32位版本。需要15G存储。):

sudo yum install intel-hpckit-32bit

5、配置环境变量

export IFORT=/opt/intel/oneapi/compiler/2021.3.0/linux export PATH=$PATH:$IFORT/bin/intel64 export LD_LIBRARY_PATH=$IFORT/lib:$LD_LIBRARY_PATH

问题解决： intel的库文件路径配置错误。

source /opt/intel/oneapi/setvars.sh

步骤二、安装zlib

1、解压并进入解压文件夹，运行以下指令：

./configure --prefix=/home/evelyn/software make check make install

步骤三、安装hdf5

1、解压并进入解压文件夹，运行以下指令：

./configure --with-zlib=/home/evelyn/software --prefix=/home/evelyn/software make sudo make check make install

步骤四、安装netcdf-c-4.2

1、安装netcdf-c-4.2需要先安装automake和libtool、doxygen。

2、生成configure

aclocal autoconf autoheader automake --add-missing

出现问题：error: configure.ac：188：required file 'ltmain.sh'

解决：autoreconf  -ivf

3、安装netcdf-c-4.2

CPPFLAGS=-I/home/evelyn/software/include/ LDFLAGS=-L/home/evelyn/software/lib/ ./configure --prefix=/home/evelyn/software/ --disable-dap make make check make install

步骤五、安装netcdf-fortran-4.2

1、生成configure

aclocal autoconf autoheader automake --add-missing

2、安装netcdf-fortran前一定要配置环境变量★

export LD_LIBRARY_PATH=/home/evelyn/software/lib/:${LD_LIBRARY_PATH}

3、安装netcdf-Fortran

CPPFLAGS=-I/home/evelyn/software/include/ LDFLAGS=-L/home/evelyn/software/lib/ ./configure --prefix=/home/evelyn/software/ make make check make install

出现问题 1：/home/evelyn/installPackage/netcdf-fortran-4.2/netcdf-fortran-netcdf-fortran-4.2/missing: 行 81: makeinfo：未找到命令

WARNING: 'makeinfo' is missing on your system.

解决：安装texinfo

出现问题2：

解决：将补丁拷贝至man4文件夹中，执行

patch < patch.patch

步骤六、设置环境变量

export NETCDF=/home/evelyn/software export LD_LIBRARY_PATH=$NETCDF/lib:$LD_LIBRARY_PATH export PATH=$NETCDF/bin:$PATH

REFFERENCES

Intel® oneAPI Toolkits Installation Guide for Linux* OS:REFFERENCES

YUM, DNF, Zypper

Re: [netcdfgroup] netcdf-fortran-4.2 build failed（补丁文件随后附上）

Re: [netcdfgroup] netcdf-fortran-4.2 build failed

--- man4/netcdf-f90.texi        (revision 57) +++ man4/netcdf-f90.texi        (working copy) @@ -2127,7 +2127,6 @@  The name of the  group will be copied to this character array. The name will be less  than NF90_MAX_NAME in length. -@item  @end table @@ -7023,7 +7022,7 @@  @node FORTRAN 77 to Fortran 90 Transition Guide, Combined Index, Summary of Fortran 90 Interface, Top  @appendix Appendix B - FORTRAN 77 to Fortran 90 Transition Guide -@unnumberedsubsec The new Fortran 90 interface +@unnumberedsec The new Fortran 90 interface  The Fortran 90 interface to the netCDF library closely follows the  FORTRAN 77 interface. In most cases, function and constant names and @@ -7045,7 +7044,7 @@  versions may be implemented entirely in Fortran 90, adding additional  error checking possibilities. -@unnumberedsubsec Changes to Inquiry functions +@unnumberedsec Changes to Inquiry functions  In the Fortran 90 interface there are two inquiry functions each for  dimensions, variables, and attributes, and a single inquiry function @@ -7079,7 +7078,7 @@   INTEGER FUNCTION  NF_INQ_ATTNAME    (NCID, VARID, ATTNUM, name)  @end example -@unnumberedsubsec Changes to put and get function +@unnumberedsec Changes to put and get function