还是昨天的错误
java.lang.AssertionError: Could not read truth value for data: [2 1 0]
即,一个for循环读txt文件,读到第三个文件就报错,也不知道为什么
决定设置断点调试一下
恩,,,问同学才知道原来真的是数据格式错了
[2 1 0]数据之间是tab键 而不是空格,,,生气,,,
好啦,程序可以顺利运行了哈哈哈哈
[INFO] — exec-maven-plugin:1.6.0:java (default-cli) @ psl_experiments —
Triad Similarity Folder: data\Similarities_K5_0.5\
Interactions Folds Folder: data\NewInteractions\
Model:
{5.0} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug1, Target) ) & ~( IGNORED_INTERACTS_DT(Drug2, Target) ) ) & DRUGSIMILARITY_ATCHIER(Drug1, Drug2) ) & INTERACTS_DT(Drug1, Target) ) & #NOTEQUAL(Drug1, Drug2) ) >> INTERACTS_DT(Drug2, Target) {squared}
{5.0} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug1, Target) ) & ~( IGNORED_INTERACTS_DT(Drug2, Target) ) ) & DRUGSIMILARITY_CHEMICAL(Drug1, Drug2) ) & INTERACTS_DT(Drug1, Target) ) & #NOTEQUAL(Drug1, Drug2) ) >> INTERACTS_DT(Drug2, Target) {squared}
{5.0} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug1, Target) ) & ~( IGNORED_INTERACTS_DT(Drug2, Target) ) ) & DRUGSIMILARITY_LIGANDJACCARD(Drug1, Drug2) ) & INTERACTS_DT(Drug1, Target) ) & #NOTEQUAL(Drug1, Drug2) ) >> INTERACTS_DT(Drug2, Target) {squared}
{5.0} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug1, Target) ) & ~( IGNORED_INTERACTS_DT(Drug2, Target) ) ) & DRUGSIMILARITY_NEWCMAPJACCARD(Drug1, Drug2) ) & INTERACTS_DT(Drug1, Target) ) & #NOTEQUAL(Drug1, Drug2) ) >> INTERACTS_DT(Drug2, Target) {squared}
{5.0} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug1, Target) ) & ~( IGNORED_INTERACTS_DT(Drug2, Target) ) ) & DRUGSIMILARITY_SIDEEFFECT(Drug1, Drug2) ) & INTERACTS_DT(Drug1, Target) ) & #NOTEQUAL(Drug1, Drug2) ) >> INTERACTS_DT(Drug2, Target) {squared}
{5.0} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug, Target1) ) & ~( IGNORED_INTERACTS_DT(Drug, Target2) ) ) & TARGETSIMILARITY_DIST(Target1, Target2) ) & INTERACTS_DT(Drug, Target1) ) & #NOTEQUAL(Target1, Target2) ) >> INTERACTS_DT(Drug, Target2) {squared}
{5.0} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug, Target1) ) & ~( IGNORED_INTERACTS_DT(Drug, Target2) ) ) & TARGETSIMILARITY_GO(Target1, Target2) ) & INTERACTS_DT(Drug, Target1) ) & #NOTEQUAL(Target1, Target2) ) >> INTERACTS_DT(Drug, Target2) {squared}
{5.0} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug, Target1) ) & ~( IGNORED_INTERACTS_DT(Drug, Target2) ) ) & TARGETSIMILARITY_SEQ(Target1, Target2) ) & INTERACTS_DT(Drug, Target1) ) & #NOTEQUAL(Target1, Target2) ) >> INTERACTS_DT(Drug, Target2) {squared}
{5.0} ~( IGNORED_INTERACTS_DT(Drug, Target) ) >> ~( INTERACTS_DT(Drug, Target) ) {squared}
Reading TARGETSIMILARITY_DIST
Reading TARGETSIMILARITY_GO
Reading TARGETSIMILARITY_SEQ
Reading DRUGSIMILARITY_ATCHIER
Reading DRUGSIMILARITY_CHEMICAL
Reading DRUGSIMILARITY_LIGANDJACCARD
Reading DRUGSIMILARITY_NEWCMAPJACCARD
Reading DRUGSIMILARITY_SIDEEFFECT
Fold 1 Start: Mon Jul 16 12:48:48 CST 2018
Reading INTERACTS_DT files for fold 1 AAAAAAAAAABPPPC
Weight Learning fold: 1
Model:
{0.0} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug1, Target) ) & ~( IGNORED_INTERACTS_DT(Drug2, Target) ) ) & DRUGSIMILARITY_ATCHIER(Drug1, Drug2) ) & INTERACTS_DT(Drug1, Target) ) & #NOTEQUAL(Drug1, Drug2) ) >> INTERACTS_DT(Drug2, Target) {squared}
{0.0} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug1, Target) ) & ~( IGNORED_INTERACTS_DT(Drug2, Target) ) ) & DRUGSIMILARITY_CHEMICAL(Drug1, Drug2) ) & INTERACTS_DT(Drug1, Target) ) & #NOTEQUAL(Drug1, Drug2) ) >> INTERACTS_DT(Drug2, Target) {squared}
{0.04713104285844597} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug1, Target) ) & ~( IGNORED_INTERACTS_DT(Drug2, Target) ) ) & DRUGSIMILARITY_LIGANDJACCARD(Drug1, Drug2) ) & INTERACTS_DT(Drug1, Target) ) & #NOTEQUAL(Drug1, Drug2) ) >> INTERACTS_DT(Drug2, Target) {squared}
{5.000161219796932} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug1, Target) ) & ~( IGNORED_INTERACTS_DT(Drug2, Target) ) ) & DRUGSIMILARITY_NEWCMAPJACCARD(Drug1, Drug2) ) & INTERACTS_DT(Drug1, Target) ) & #NOTEQUAL(Drug1, Drug2) ) >> INTERACTS_DT(Drug2, Target) {squared}
{0.009881872577411643} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug1, Target) ) & ~( IGNORED_INTERACTS_DT(Drug2, Target) ) ) & DRUGSIMILARITY_SIDEEFFECT(Drug1, Drug2) ) & INTERACTS_DT(Drug1, Target) ) & #NOTEQUAL(Drug1, Drug2) ) >> INTERACTS_DT(Drug2, Target) {squared}
{0.043983738195288294} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug, Target1) ) & ~( IGNORED_INTERACTS_DT(Drug, Target2) ) ) & TARGETSIMILARITY_DIST(Target1, Target2) ) & INTERACTS_DT(Drug, Target1) ) & #NOTEQUAL(Target1, Target2) ) >> INTERACTS_DT(Drug, Target2) {squared}
{0.1438422163672693} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug, Target1) ) & ~( IGNORED_INTERACTS_DT(Drug, Target2) ) ) & TARGETSIMILARITY_GO(Target1, Target2) ) & INTERACTS_DT(Drug, Target1) ) & #NOTEQUAL(Target1, Target2) ) >> INTERACTS_DT(Drug, Target2) {squared}
{0.03273018930127567} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug, Target1) ) & ~( IGNORED_INTERACTS_DT(Drug, Target2) ) ) & TARGETSIMILARITY_SEQ(Target1, Target2) ) & INTERACTS_DT(Drug, Target1) ) & #NOTEQUAL(Target1, Target2) ) >> INTERACTS_DT(Drug, Target2) {squared}
{0.14569280119923328} ~( IGNORED_INTERACTS_DT(Drug, Target) ) >> ~( INTERACTS_DT(Drug, Target) ) {squared}
Inferring fold: 1
Fold 1 End: Mon Jul 16 12:48:49 CST 2018
Evaluating fold: 1
Area under positive-class PR curve: NaN
Area under negetive-class PR curve: 0.875
Area under ROC curve: NaN
Fold 2 Start: Mon Jul 16 12:48:49 CST 2018
Reading INTERACTS_DT files for fold 2 AAAAAAAAAABPPPC
Weight Learning fold: 2
Model:
{0.14969706723169895} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug1, Target) ) & ~( IGNORED_INTERACTS_DT(Drug2, Target) ) ) & DRUGSIMILARITY_ATCHIER(Drug1, Drug2) ) & INTERACTS_DT(Drug1, Target) ) & #NOTEQUAL(Drug1, Drug2) ) >> INTERACTS_DT(Drug2, Target) {squared}
{0.03405510353686554} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug1, Target) ) & ~( IGNORED_INTERACTS_DT(Drug2, Target) ) ) & DRUGSIMILARITY_CHEMICAL(Drug1, Drug2) ) & INTERACTS_DT(Drug1, Target) ) & #NOTEQUAL(Drug1, Drug2) ) >> INTERACTS_DT(Drug2, Target) {squared}
{0.04573328336295533} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug1, Target) ) & ~( IGNORED_INTERACTS_DT(Drug2, Target) ) ) & DRUGSIMILARITY_LIGANDJACCARD(Drug1, Drug2) ) & INTERACTS_DT(Drug1, Target) ) & #NOTEQUAL(Drug1, Drug2) ) >> INTERACTS_DT(Drug2, Target) {squared}
{0.07152330877843018} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug1, Target) ) & ~( IGNORED_INTERACTS_DT(Drug2, Target) ) ) & DRUGSIMILARITY_NEWCMAPJACCARD(Drug1, Drug2) ) & INTERACTS_DT(Drug1, Target) ) & #NOTEQUAL(Drug1, Drug2) ) >> INTERACTS_DT(Drug2, Target) {squared}
{0.05937825203377706} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug1, Target) ) & ~( IGNORED_INTERACTS_DT(Drug2, Target) ) ) & DRUGSIMILARITY_SIDEEFFECT(Drug1, Drug2) ) & INTERACTS_DT(Drug1, Target) ) & #NOTEQUAL(Drug1, Drug2) ) >> INTERACTS_DT(Drug2, Target) {squared}
{0.8698957877984196} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug, Target1) ) & ~( IGNORED_INTERACTS_DT(Drug, Target2) ) ) & TARGETSIMILARITY_DIST(Target1, Target2) ) & INTERACTS_DT(Drug, Target1) ) & #NOTEQUAL(Target1, Target2) ) >> INTERACTS_DT(Drug, Target2) {squared}
{0.05045382292160662} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug, Target1) ) & ~( IGNORED_INTERACTS_DT(Drug, Target2) ) ) & TARGETSIMILARITY_GO(Target1, Target2) ) & INTERACTS_DT(Drug, Target1) ) & #NOTEQUAL(Target1, Target2) ) >> INTERACTS_DT(Drug, Target2) {squared}
{0.8981581757305891} ( ( ( ( ~( IGNORED_INTERACTS_DT(Drug, Target1) ) & ~( IGNORED_INTERACTS_DT(Drug, Target2) ) ) & TARGETSIMILARITY_SEQ(Target1, Target2) ) & INTERACTS_DT(Drug, Target1) ) & #NOTEQUAL(Target1, Target2) ) >> INTERACTS_DT(Drug, Target2) {squared}
{1.5548551559621282} ~( IGNORED_INTERACTS_DT(Drug, Target) ) >> ~( INTERACTS_DT(Drug, Target) ) {squared}
Inferring fold: 2
Fold 2 End: Mon Jul 16 12:48:49 CST 2018
Evaluating fold: 2
Area under positive-class PR curve: NaN
Area under negetive-class PR curve: 0.875
Area under ROC curve: NaN
接下来的目标就是用debug看懂代码,然后想办法修改大码使其输出矩阵