[root@y configure]# git add . warning: You ran 'git add' with neither '-A (--all)' or '--ignore-removal', whose behaviour will change in Git 2.0 with respect to paths you removed. Paths like 'hh.sh' that are removed from your working tree are ignored with this version of Git. * 'git add --ignore-removal <pathspec>', which is the current default, ignores paths you removed from your working tree. * 'git add --all <pathspec>' will let you also record the removals. Run 'git status' to check the paths you removed from your working tree.
git add -A
git add -all