记一次MRJob在centos中hadoop运行512和256错误解决方案

于 2021-04-24 13:02:33 发布
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512错误解决（好像是512，反正是5开头）

将基于mrjob写的mapreduce python程序在hadoop上运行时会出现512错误，其原因很简单，是因为没有运行yarn（hadoop的任务调度程序），请参考网络上的相关配置教程对相应xml进行配置后启动yarn，512错误便能得到解决。个人配置及启动流程如下，供参考：
1.mapred-site.xml文件
位于/usr/local/hadoop/etc/hadoop目录下，配置如下：

<configuration>
        <property>
                <name>mapreduce.framework.name</name>
                <value>yarn</value>
        </property>
</configuration>

2.yarn-site.xml文件
同样位于/usr/local/hadoop/etc/hadoop目录下，配置如下：

<configuration>

<!-- Site specific YARN configuration properties -->
        <property>
                <name>yarn.nodemanager.aux-services</name>
                <value>mapreduce_shuffle</value>
        </property>

        <property>
                <description>Whether virtual memory limits will be enforced forcontainers.</description>
                <name>yarn.nodemanager.vmem-check-enabled</name>
                <value>false</value>
        </property>

</configuration>

3.配置后启动yarn（需要先启动hadoop）

[hadoop@localhost ~]$ /usr/local/hadoop/sbin/start-yarn.sh

可选择启动历史服务器，如下

[hadoop@localhost ~]$ /usr/local/hadoop/sbin/mr-jobhistory-daemon.sh start historyserver

此外可通过jps命令查看hadoop各个服务的运行情况

[hadoop@localhost ~]$ jps
19060 DataNode
18965 NameNode
19654 NodeManager
19240 SecondaryNameNode
19380 ResourceManager
25702 Jps
6308 JobHistoryServer

随后再执行原命令，512错误即可得到解决。

256错误

对于我的256错误，报错如下：

Scanning logs for probable cause of failure...
Looking for history log in hdfs:///tmp/hadoop-yarn/staging...
  Parsing history log: hdfs:///tmp/hadoop-yarn/staging/history/done_intermediate/hadoop/job_1619235102568_0003-1619236708570-hadoop-streamjob5490351329862187422.jar-1619236845112-0-0-FAILED-default-1619236721763.jhist
Looking for task syslogs in /usr/local/hadoop/logs/userlogs/application_1619235102568_0003...
  Parsing task log: /usr/local/hadoop/logs/userlogs/application_1619235102568_0003/container_1619235102568_0003_01_000011/stderr
  Parsing task log: /usr/local/hadoop/logs/userlogs/application_1619235102568_0003/container_1619235102568_0003_01_000011/syslog

Probable cause of failure:

PipeMapRed failed!
java.lang.RuntimeException: PipeMapRed.waitOutputThreads(): subprocess failed with code 127
	at org.apache.hadoop.streaming.PipeMapRed.waitOutputThreads(PipeMapRed.java:322)
	at org.apache.hadoop.streaming.PipeMapRed.mapRedFinished(PipeMapRed.java:535)
	at org.apache.hadoop.streaming.PipeMapper.close(PipeMapper.java:130)
	at org.apache.hadoop.mapred.MapRunner.run(MapRunner.java:61)
	at org.apache.hadoop.streaming.PipeMapRunner.run(PipeMapRunner.java:34)
	at org.apache.hadoop.mapred.MapTask.runOldMapper(MapTask.java:450)
	at org.apache.hadoop.mapred.MapTask.run(MapTask.java:343)
	at org.apache.hadoop.mapred.YarnChild$2.run(YarnChild.java:163)
	at java.security.AccessController.doPrivileged(Native Method)
	at javax.security.auth.Subject.doAs(Subject.java:421)
	at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1628)
	at org.apache.hadoop.mapred.YarnChild.main(YarnChild.java:158)

(from lines 34-47 of /usr/local/hadoop/logs/userlogs/application_1619235102568_0003/container_1619235102568_0003_01_000011/syslog)

caused by:

+ python3 -c 'import fcntl; fcntl.flock(9, fcntl.LOCK_EX)'
setup-wrapper.sh:行6: python3: 未找到命令

(from lines 3-4 of /usr/local/hadoop/logs/userlogs/application_1619235102568_0003/container_1619235102568_0003_01_000011/stderr)

while reading input from lines 8-14 of hdfs://localhost:9000/user/hadoop/text


Step 1 of 1 failed: Command '['/usr/local/hadoop/bin/hadoop', 'jar', '/usr/local/hadoop/share/hadoop/tools/lib/hadoop-streaming-2.6.0.jar', '-files', 'hdfs:///user/hadoop/tmp/mrjob/test3.hadoop.20210424.035749.843284/files/wd/mrjob.zip#mrjob.zip,hdfs:///user/hadoop/tmp/mrjob/test3.hadoop.20210424.035749.843284/files/wd/setup-wrapper.sh#setup-wrapper.sh,hdfs:///user/hadoop/tmp/mrjob/test3.hadoop.20210424.035749.843284/files/wd/test3.py#test3.py', '-input', 'hdfs:///user/hadoop/text', '-output', 'hdfs:///user/hadoop/output', '-mapper', '/bin/sh -ex setup-wrapper.sh python3 test3.py --step-num=0 --mapper', '-reducer', '/bin/sh -ex setup-wrapper.sh python3 test3.py --step-num=0 --reducer']' returned non-zero exit status 256.

可以看到经过自动对日志的分析，我的256报错原因是因为：
caused by:
+ python3 -c ‘import fcntl; fcntl.flock(9, fcntl.LOCK_EX)’
setup-wrapper.sh:行6: python3: 未找到命令

随后在命令行执行如下指令，同样发现未找到命令

[hadoop@localhost workspace]$ python3
-bash: python3: 未找到命令

因此分析问题原因是因为没给python3配环境变量导致的，虽然之前有配置过python的指向，但未配置python3的，随后添加链接，指令如下:

[hadoop@localhost bin]$ sudo ln -s /usr/local/python3/bin/python3.6 /usr/bin/python3

其中对于你的python3的source请根据你的实际python3安装位置进行调整，若想检查是否配置链接好，可输入以下命令进行验证，当弹出版本信息说明配置成功了。

[hadoop@localhost ~]$ python3 -v
import _frozen_importlib # frozen
import _imp # builtin
import sys # builtin
import '_warnings' # <class '_frozen_importlib.BuiltinImporter'>
import '_thread' # <class '_frozen_importlib.BuiltinImporter'>
import '_weakref' # <class '_frozen_importlib.BuiltinImporter'>
import '_frozen_importlib_external' # <class '_frozen_importlib.FrozenImporter'>
import '_io' # <class '_frozen_importlib.BuiltinImporter'>
import 'marshal' # <class '_frozen_importlib.BuiltinImporter'>
import 'posix' # <class '_frozen_importlib.BuiltinImporter'>
import _thread # previously loaded ('_thread')
import '_thread' # <class '_frozen_importlib.BuiltinImporter'>
import _weakref # previously loaded ('_weakref')
import '_weakref' # <class '_frozen_importlib.BuiltinImporter'>
# installing zipimport hook
import 'zipimport' # <class '_frozen_importlib.BuiltinImporter'>
# installed zipimport hook
# /usr/local/python3/lib/python3.6/encodings/__pycache__/__init__.cpython-36.pyc matches /usr/local/python3/lib/python3.6/encodings/__init__.py
# code object from '/usr/local/python3/lib/python3.6/encodings/__pycache__/__init__.cpython-36.pyc'
# /usr/local/python3/lib/python3.6/__pycache__/codecs.cpython-36.pyc matches /usr/local/python3/lib/python3.6/codecs.py
# code object from '/usr/local/python3/lib/python3.6/__pycache__/codecs.cpython-36.pyc'
import '_codecs' # <class '_frozen_importlib.BuiltinImporter'>
import 'codecs' # <_frozen_importlib_external.SourceFileLoader object at 0x7f8bf264d048>
# /usr/local/python3/lib/python3.6/encodings/__pycache__/aliases.cpython-36.pyc matches /usr/local/python3/lib/python3.6/encodings/aliases.py
# code object from '/usr/local/python3/lib/python3.6/encodings/__pycache__/aliases.cpython-36.pyc'
import 'encodings.aliases' # <_frozen_importlib_external.SourceFileLoader object at 0x7f8bf265a9e8>
import 'encodings' # <_frozen_importlib_external.SourceFileLoader object at 0x7f8bf26c2b70>
# /usr/local/python3/lib/python3.6/encodings/__pycache__/utf_8.cpython-36.pyc matches /usr/local/python3/lib/python3.6/encodings/utf_8.py
# code object from '/usr/local/python3/lib/python3.6/encodings/__pycache__/utf_8.cpython-36.pyc'
import 'encodings.utf_8' # <_frozen_importlib_external.SourceFileLoader object at 0x7f8bf26687f0>
import '_signal' # <class '_frozen_importlib.BuiltinImporter'>
# /usr/local/python3/lib/python3.6/encodings/__pycache__/latin_1.cpython-36.pyc matches /usr/local/python3/lib/python3.6/encodings/latin_1.py
# code object from '/usr/local/python3/lib/python3.6/encodings/__pycache__/latin_1.cpython-36.pyc'
import 'encodings.latin_1' # <_frozen_importlib_external.SourceFileLoader object at 0x7f8bf266e320>
# /usr/local/python3/lib/python3.6/__pycache__/io.cpython-36.pyc matches /usr/local/python3/lib/python3.6/io.py
# code object from '/usr/local/python3/lib/python3.6/__pycache__/io.cpython-36.pyc'
# /usr/local/python3/lib/python3.6/__pycache__/abc.cpython-36.pyc matches /usr/local/python3/lib/python3.6/abc.py
# code object from '/usr/local/python3/lib/python3.6/__pycache__/abc.cpython-36.pyc'
# /usr/local/python3/lib/python3.6/__pycache__/_weakrefset.cpython-36.pyc matches /usr/local/python3/lib/python3.6/_weakrefset.py
# code object from '/usr/local/python3/lib/python3.6/__pycache__/_weakrefset.cpython-36.pyc'
import '_weakrefset' # <_frozen_importlib_external.SourceFileLoader object at 0x7f8bf26742b0>
import 'abc' # <_frozen_importlib_external.SourceFileLoader object at 0x7f8bf266e908>
import 'io' # <_frozen_importlib_external.SourceFileLoader object at 0x7f8bf266e550>
# /usr/local/python3/lib/python3.6/__pycache__/site.cpython-36.pyc matches /usr/local/python3/lib/python3.6/site.py
# code object from '/usr/local/python3/lib/python3.6/__pycache__/site.cpython-36.pyc'
# /usr/local/python3/lib/python3.6/__pycache__/os.cpython-36.pyc matches /usr/local/python3/lib/python3.6/os.py
# code object from '/usr/local/python3/lib/python3.6/__pycache__/os.cpython-36.pyc'
import 'errno' # <class '_frozen_importlib.BuiltinImporter'>
# /usr/local/python3/lib/python3.6/__pycache__/stat.cpython-36.pyc matches /usr/local/python3/lib/python3.6/stat.py
# code object from '/usr/local/python3/lib/python3.6/__pycache__/stat.cpython-36.pyc'
import '_stat' # <class '_frozen_importlib.BuiltinImporter'>
import 'stat' # <_frozen_importlib_external.SourceFileLoader object at 0x7f8bf26185f8>
# /usr/local/python3/lib/python3.6/__pycache__/posixpath.cpython-36.pyc matches /usr/local/python3/lib/python3.6/posixpath.py
# code object from '/usr/local/python3/lib/python3.6/__pycache__/posixpath.cpython-36.pyc'
# /usr/local/python3/lib/python3.6/__pycache__/genericpath.cpython-36.pyc matches /usr/local/python3/lib/python3.6/genericpath.py
# code object from '/usr/local/python3/lib/python3.6/__pycache__/genericpath.cpython-36.pyc'
import 'genericpath' # <_frozen_importlib_external.SourceFileLoader object at 0x7f8bf261cfd0>
import 'posixpath' # <_frozen_importlib_external.SourceFileLoader object at 0x7f8bf2618cc0>
# /usr/local/python3/lib/python3.6/__pycache__/_collections_abc.cpython-36.pyc matches /usr/local/python3/lib/python3.6/_collections_abc.py
# code object from '/usr/local/python3/lib/python3.6/__pycache__/_collections_abc.cpython-36.pyc'
import '_collections_abc' # <_frozen_importlib_external.SourceFileLoader object at 0x7f8bf2622668>
import 'os' # <_frozen_importlib_external.SourceFileLoader object at 0x7f8bf2686ef0>
# /usr/local/python3/lib/python3.6/__pycache__/_sitebuiltins.cpython-36.pyc matches /usr/local/python3/lib/python3.6/_sitebuiltins.py
# code object from '/usr/local/python3/lib/python3.6/__pycache__/_sitebuiltins.cpython-36.pyc'
import '_sitebuiltins' # <_frozen_importlib_external.SourceFileLoader object at 0x7f8bf26092e8>
# /usr/local/python3/lib/python3.6/__pycache__/sysconfig.cpython-36.pyc matches /usr/local/python3/lib/python3.6/sysconfig.py
# code object from '/usr/local/python3/lib/python3.6/__pycache__/sysconfig.cpython-36.pyc'
import 'sysconfig' # <_frozen_importlib_external.SourceFileLoader object at 0x7f8bf25d8ac8>
# /usr/local/python3/lib/python3.6/__pycache__/_sysconfigdata_m_linux_x86_64-linux-gnu.cpython-36.pyc matches /usr/local/python3/lib/python3.6/_sysconfigdata_m_linux_x86_64-linux-gnu.py
# code object from '/usr/local/python3/lib/python3.6/__pycache__/_sysconfigdata_m_linux_x86_64-linux-gnu.cpython-36.pyc'
import '_sysconfigdata_m_linux_x86_64-linux-gnu' # <_frozen_importlib_external.SourceFileLoader object at 0x7f8bf25ea278>
import 'site' # <_frozen_importlib_external.SourceFileLoader object at 0x7f8bf2679be0>
Python 3.6.8 (default, Apr 23 2021, 14:01:07) 
[GCC 4.8.5 20150623 (Red Hat 4.8.5-44)] on linux
Type "help", "copyright", "credits" or "license" for more information.
# extension module 'readline' loaded from '/usr/local/python3/lib/python3.6/lib-dynload/readline.cpython-36m-x86_64-linux-gnu.so'
# extension module 'readline' executed from '/usr/local/python3/lib/python3.6/lib-dynload/readline.cpython-36m-x86_64-linux-gnu.so'
import 'readline' # <_frozen_importlib_external.ExtensionFileLoader object at 0x7f8bf25f95c0>
import 'atexit' # <class '_frozen_importlib.BuiltinImporter'>
# /usr/local/python3/lib/python3.6/__pycache__/rlcompleter.cpython-36.pyc matches /usr/local/python3/lib/python3.6/rlcompleter.py
# code object from '/usr/local/python3/lib/python3.6/__pycache__/rlcompleter.cpython-36.pyc'
import 'rlcompleter' # <_frozen_importlib_external.SourceFileLoader object at 0x7f8bf25f96d8>
>>>

最后再次执行我们之前的命令，发现运行成功，未出现256错误
（ps：造成256的原因可能是多种多样的，请根据自己的错误日志进行具体分析，有可能您的错误产生情况与我的并不相同）

[hadoop@localhost workspace]$ python ./test3.py -r hadoop hdfs:///user/hadoop/text -o hdfs:///user/hadoop/output
No configs found; falling back on auto-configuration
No configs specified for hadoop runner
Looking for hadoop binary in /usr/local/hadoop/bin...
Found hadoop binary: /usr/local/hadoop/bin/hadoop
Using Hadoop version 2.6.0
Looking for Hadoop streaming jar in /usr/local/hadoop...
Found Hadoop streaming jar: /usr/local/hadoop/share/hadoop/tools/lib/hadoop-streaming-2.6.0.jar
Creating temp directory /tmp/test3.hadoop.20210424.041111.606248
uploading working dir files to hdfs:///user/hadoop/tmp/mrjob/test3.hadoop.20210424.041111.606248/files/wd...
Copying other local files to hdfs:///user/hadoop/tmp/mrjob/test3.hadoop.20210424.041111.606248/files/
Running step 1 of 1...
  packageJobJar: [/tmp/hadoop-unjar7048697663376485730/] [] /tmp/streamjob3267295581038199778.jar tmpDir=null
  Connecting to ResourceManager at /0.0.0.0:8032
  Connecting to ResourceManager at /0.0.0.0:8032
  Total input paths to process : 1
  number of splits:2
  Submitting tokens for job: job_1619235102568_0004
  Submitted application application_1619235102568_0004
  The url to track the job: http://localhost:8088/proxy/application_1619235102568_0004/
  Running job: job_1619235102568_0004
  Job job_1619235102568_0004 running in uber mode : false
   map 0% reduce 0%
   map 33% reduce 0%
   map 67% reduce 0%
   map 83% reduce 0%
   map 100% reduce 0%
   map 100% reduce 100%
  Job job_1619235102568_0004 completed successfully
  Output directory: hdfs:///user/hadoop/output
Counters: 49
	File Input Format Counters 
		Bytes Read=21
	File Output Format Counters 
		Bytes Written=24
	File System Counters
		FILE: Number of bytes read=62
		FILE: Number of bytes written=328656
		FILE: Number of large read operations=0
		FILE: Number of read operations=0
		FILE: Number of write operations=0
		HDFS: Number of bytes read=201
		HDFS: Number of bytes written=24
		HDFS: Number of large read operations=0
		HDFS: Number of read operations=9
		HDFS: Number of write operations=2
	Job Counters 
		Data-local map tasks=2
		Launched map tasks=2
		Launched reduce tasks=1
		Total megabyte-seconds taken by all map tasks=127718400
		Total megabyte-seconds taken by all reduce tasks=18784256
		Total time spent by all map tasks (ms)=124725
		Total time spent by all maps in occupied slots (ms)=124725
		Total time spent by all reduce tasks (ms)=18344
		Total time spent by all reduces in occupied slots (ms)=18344
		Total vcore-seconds taken by all map tasks=124725
		Total vcore-seconds taken by all reduce tasks=18344
	Map-Reduce Framework
		CPU time spent (ms)=6040
		Combine input records=0
		Combine output records=0
		Failed Shuffles=0
		GC time elapsed (ms)=11489
		Input split bytes=180
		Map input records=3
		Map output bytes=42
		Map output materialized bytes=68
		Map output records=7
		Merged Map outputs=2
		Physical memory (bytes) snapshot=397221888
		Reduce input groups=4
		Reduce input records=7
		Reduce output records=4
		Reduce shuffle bytes=68
		Shuffled Maps =2
		Spilled Records=14
		Total committed heap usage (bytes)=256843776
		Virtual memory (bytes) snapshot=3073417216
	Shuffle Errors
		BAD_ID=0
		CONNECTION=0
		IO_ERROR=0
		WRONG_LENGTH=0
		WRONG_MAP=0
		WRONG_REDUCE=0
job output is in hdfs:///user/hadoop/output
Removing HDFS temp directory hdfs:///user/hadoop/tmp/mrjob/test3.hadoop.20210424.041111.606248...
Removing temp directory /tmp/test3.hadoop.20210424.041111.606248...
[hadoop@localhost workspace]$

转载请注明出处，感谢。

ziswang
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mrjob完全支持亚马逊的Elastic MapReduce（EMR）服务，该服务允许您按小时在Hadoop集群上购买时间。mrjob对Google Cloud data proc（data proc）提供基本支持，允许您在Hadoop集群上按分钟购买时间。它也适用于您...
Linux内核最新的连续内存分配器(CMA)——避免预留大块内存
liuxd3000的专栏
02-13 1381
在我们使用ARM等嵌入式Linux系统的时候，一个头疼的问题是GPU，Camera，HDMI等都需要预留大量连续内存，这部分内存平时不用，但是一般的做法又必须先预留着。目前，Marek Szyprowski和Michal Nazarewicz实现了一套全新的Contiguous Memory Allocator。通过这套机制，我们可以做到不预留内存，这些内存平时是可用的，只有当需要的时候才被分配给
增大dma的分配
weixin_30294295的博客
10-14 604
前言 　　项目中需要通过驱动与fpga通讯，获取fpga往内存里写的数据。因为数据量比较大，需要驱动分配600多M的内存给fpga来写数据，且因为是与fpga通讯，需要连续的内存，还得是uncached的，因此打算采用dma接口dma_alloc_coherent来分配如此大的内存。然而，在分配的过程中遇到了一些问题，下面对这次的调试进行总结。 环境说明 soc: zc702(32bit arm...
“内存不足”的解决方法
weixin_34206899的博客
01-18 429
大家在应用电脑时一定都遇到过机器提示内存不足的现象吧，那么什么是内存不足，又该如何处理呢，下面我们就来讲一讲有关这方面的内容。　　　　所谓“内存不足”就是指在启动或运行DOS应用程序和Windows应用程序时，系统报“Out of memory"或“内存不足"的错误信息。“内存不足”是一种很常见的故障，运行DOS应用程序和Windows应用程序引起“内存不足”的原因不完全相同...
PipeMapRed.waitOutputThreads(): subprocess failed with code N
Mr. Lee的专栏
12-14 1049
经常遇到的exception是：PipeMapRed.waitOutputThreads(): subprocess failed with code N“OS error code 1: Operation not permitted” “OS error code 2: No such file or directory” “OS error code 3: No such process”
Failed to resolve:问题的解决方法
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HelloWorld的专栏
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构建项目的时候出现了这个异常。 解决办法1：修改项目下的的bulid.gradle文件，添加maven { url 'https://jitpack.io' }即可： allprojects { repositories { google() jcenter() maven { url 'https://jitpack.io' } ...
hadoop常见错误及解决办法！
沉底的石头
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android studio提示failed to create jvm和could not reserve enough space for object heap的解决方法
今天，又一只咸鱼失去了梦想_(¦3」∠)_
09-18 922
最近从eclipse迁移到android studio遇到一些小问题，记录一下我的解决方法。 Android Studio failed to create jvm error code -4 这个问题都说是内存问题，大概也就是吧。主要是把-Xmx这个参数改小就好了，比如改成512m。 -Xmx512m could not reserve enough space for obje
解决hugegraph启动时报错问题：Failed to start HugeGraphServer, requires at least 512m free memory
qq_41615394的博客
11-08 1524
今天在运行hugegraph时，报错提示让看错误日志，日志的大致意思是：无法启动HugeGraphServer，需要至少512M可用内存。截图如下： 日志截图： 解决法案：修改bin目录下的hugegraph-server.sh文件，将运行内存改成256M，具体如下： vi命令打开文件：vihugegraph-server.sh，然后将此处的512改成如下图的256，然后wq保存并退出，重新启动，发现正常启动了。 ...
Failed to Resolve:问题
bluedingdingd的博客
05-30 2395
Failed to Resolve:问题 出现大面积的failed to resolve的时候一般是仓库的问题 这个是和可以看下是否在build.gradle添加了仓库 如果已经添加 有可能是SDK没有下载支出Google Repository 如果只是个别的failed问题 有可能是android studio的SDK tools版本低于 compileSdkVersion ...
Python在Hadoop框架中的应用探索
"本文主要探讨了在Hadoop生态系统中使用Python进行数据分析的挑战及解决方案，作者分享了对几个Python与Hadoop集成框架的评价和经验，包括Hadoop流、mrjob、dumbo、hadoopy和pydoop。文章指出，虽然Hadoop最初设计...
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