INPUTS.data_type=4;
INPUTS.format_data=2;
INPUTS.data_selection=[];
INPUTS.perczeros_genes=90;
INPUTS.perczeros_cells=100;
INPUTS.cells_2_cut=0;
INPUTS.perc_top_genes=10;
INPUTS.optimize=0; % The number of cluster is known a priori
INPUTS.parallel=1; % Use parallelization option
INPUTS.runs=50; % Perform 50 independent runs of greedy algorithm
INPUTS.max_iter=100; % Limit the number of iterations in greedy algorithm to 100
INPUTS.cluster='kmedoids'; % Use k-medoids in consensus clustering
INPUTS.thr_transition_genes=50; % Set threshold for transition genes determination to 50%
INPUTS.plot_fig=1; % Plot figure of smoothened gene expression along path
INPUTS.hclustering=1; % Perform hierarchical clustering of gene expression for each path
INPUTS.method=2; % Use pairwise correlation for the gene co-expression network (value_cutoff=0.8, pvalue_cutoff=0.01)
INPUTS.moving_average_window=10; % Set the size of window (percent of cells in each path) used for the moving averaging
%
% Upload and pre-process data
INPUTS.format_data=2;
INPUTS.data_selection=[];
INPUTS.perczeros_genes=90;
INPUTS.perczeros_cells=100;
INPUTS.cells_2_cut=0;
INPUTS.perc_top_genes=10;
INPUTS.optimize=0; % The number of cluster is known a priori
INPUTS.parallel=1; % Use parallelization option
INPUTS.runs=50; % Perform 50 independent runs of greedy algorithm
INPUTS.max_iter=100; % Limit the number of iterations in greedy algorithm to 100
INPUTS.cluster='kmedoids'; % Use k-medoids in consensus clustering
INPUTS.thr_transition_genes=50; % Set threshold for transition genes determination to 50%
INPUTS.plot_fig=1; % Plot figure of smoothened gene expression along path
INPUTS.hclustering=1; % Perform hierarchical clustering of gene expression for each path
INPUTS.method=2; % Use pairwise correlation for the gene co-expression network (value_cutoff=0.8, pvalue_cutoff=0.01)
INPUTS.moving_average_window=10; % Set the size of window (percent of cells in each path) used for the moving averaging
%
% Upload and pre-process data
DATA = import_data(INPUTS);
未定义函数或变量 'import_data'。
出错 MAIN (line 44)
DATA = import_data(INPUTS);
小白求助~