WinXP:C:\Documents and Settings\[用户名]\Application Data\Scooter Software\Beyond Compare 3
Win 7 :
C:\Users\Administrator.WIN-LMPOOFM31GQ\AppData\Roaming\Scooter Software\Beyond Compare 3
将此文件夹下的文件全部删除即可解决问题
WinXP:C:\Documents and Settings\[用户名]\Application Data\Scooter Software\Beyond Compare 3