% % test all segmentation metric functions
% SEG = imread('0.png');
% GT = imread('1.png');
function [dice,hd,jaccard,apd,confm_index,precision,recall]=access_img(SEG,GT)
% binarize
SEG = im2bw(SEG, 0.1);
GT = im2bw(GT, 0.1);
dice = Dice_Ratio(SEG, GT);
hd = Hausdorff_Dist(SEG, GT);
jaccard = Jaccard_Index(SEG, GT);
apd = Avg_PerpenDist(SEG, GT);
confm_index = ConformityCoefficient(SEG, GT);
precision = Precision(SEG, GT);
recall = Recall(SEG, GT);
end
% Dice_Ratio:
function dr = Dice_Ratio(SEG, GT)
% SEG, GT are the binary segmentation and ground truth areas, respectively.
% dice ratio
dr = 2*double(sum(uint8(SEG(:) & GT(:)))) / double(sum(uint8(SEG(:))) + sum(uint8(GT(:))));
end
% Hausdorff_Dist (得到hd 之后,还需要乘以像素的物理距离,才是真正的 Hausdorff 距离)(update: 对于三维体数据中该距离的计算,ITK方面给出的计算流程是:先将体数据匹配到同一物理空间,然后进行计算,这就要求两个体数据必须具备相同的物理参数。所以本代码不适用于三维体数据的计算。):
function hd = Hausdorff_Dist(SEG, GT)
% SEG, GT are the binary segmentation and ground truth areas, respectively.
% erode element
s = cat(3, [0 0 0 ; 0 1 0 ; 0 0 0], [0 1 0 ; 1 1 1 ; 0 1 0], [0 0 0 ; 0 1 0 ; 0 0 0]);
% generate boundary
Boundary_SEG = logical(SEG) & ~imerode(logical(SEG), s);
Boundary_GT = logical(GT) & ~imerode(logical(GT), s);
% distance to nearest boundary point
Dist_SEG = bwdist(Boundary_SEG, 'euclidean');
Dist_GT = bwdist(Boundary_GT, 'euclidean');
% distance to another boundary
min_S2G = sort(Dist_GT( Boundary_SEG(:) ), 'ascend');
min_G2S = sort(Dist_SEG( Boundary_GT(:) ), 'ascend');
% hausdorff distance
hd = max(min_S2G(end), min_G2S(end));
end
% Jaccard_Index:
function jaccard = Jaccard_Index(SEG, GT)
% SEG, GT are the binary segmentation and ground truth areas, respectively.
% jaccard index
jaccard = double(sum(uint8(SEG(:) & GT(:)))) / double(sum(uint8(SEG(:) | GT(:))));
end
% Avg_PerpenDist (得到 apd 之后,还需要乘以像素的物理距离,才是真正的 apd 值):
function apd = Avg_PerpenDist(SEG, GT)
% SEG, GT are the binary segmentation and ground truth areas, respectively.
% erode element
s = cat(3, [0 0 0 ; 0 1 0 ; 0 0 0], [0 1 0 ; 1 1 1 ; 0 1 0], [0 0 0 ; 0 1 0 ; 0 0 0]);
% generate boundary
Boundary_SEG = logical(SEG) & ~imerode(logical(SEG), s);
Boundary_GT = logical(GT) & ~imerode(logical(GT), s);
% distance to nearest boundary point
Dist_GT = bwdist(Boundary_GT, 'euclidean');
% distance to another boundary
min_S2G = Dist_GT( Boundary_SEG(:) );
% average perpendicular distance from SEG to GT
apd = sum(min_S2G(:)) / length(min_S2G(:));
end
% ConformityCoefficient:
function confm_index = ConformityCoefficient(SEG, GT)
% SEG, GT are the binary segmentation and ground truth areas, respectively.
% dice ratio
dr = 2*double(sum(uint8(SEG(:) & GT(:)))) / double(sum(uint8(SEG(:))) + sum(uint8(GT(:))));
% conformity coefficient
confm_index = (3*dr - 2) / dr;
end
% Precision:
function precision = Precision(SEG, GT)
% SEG, GT are the binary segmentation and ground truth areas, respectively.
% precision
precision = double(sum(uint8(SEG(:) & GT(:)))) / double(sum(uint8(SEG(:))));
end
% Recall:
function recall = Recall(SEG, GT)
% SEG, GT are the binary segmentation and ground truth areas, respectively.
% recall
recall = double(sum(uint8(SEG(:) & GT(:)))) / double(sum(uint8(GT(:))));
end
转载
% ---------------------
% 作者:Life_XY
% 来源:CSDN
% 原文:https://blog.csdn.net/yangyangyang20092010/article/details/51637073
% 版权声明:本文为博主原创文章,转载请附上博文链接!