connectplot.py-20171127

#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Mon Nov 27 09:59:15 2017

@author: vicky
"""


import plotly.plotly as py
import plotly.graph_objs as go

import igraph
from igraph import *

#nr_vertices = 25
#v_label = map(str, range(nr_vertices))
#G = Graph.Tree(nr_vertices, 2) # 2 stands for children number
#lay = G.layout('rt')
#
#position = {k: lay[k] for k in range(nr_vertices)}
#Y = [lay[k][1] for k in range(nr_vertices)]
#M = max(Y)
#
#es = EdgeSeq(G) # sequence of edges
#E = [e.tuple for e in G.es] # list of edges
#
#L = len(position)
#Xn = [position[k][0] for k in range(L)]
#Yn = [2*M-position[k][1] for k in range(L)]
#Xe = []
#Ye = []
#for edge in E:
#    Xe+=[position[edge[0]][0],position[edge[1]][0], None]
#    Ye+=[2*M-position[edge[0]][1],2*M-position[edge[1]][1], None] 
#
#labels = v_label
#
#lines = go.Scatter(x=Xe,
#                   y=Ye,
#                   mode='lines',
#                   line=dict(color='rgb(210,210,210)', width=1),
#                   hoverinfo='none'
#                   )
#dots = go.Scatter(x=Xn,
#                  y=Yn,
#                  mode='markers',
#                  name='',
#                  marker=dict(symbol='dot',
#                                size=18, 
#                                color='#6175c1',    #'#DB4551', 
#                                line=dict(color='rgb(50,50,50)', width=1)
#                                ),
#                  text=labels,
#                  hoverinfo='text',
#                  opacity=0.8
#                  )
#        
#def make_annotations(pos, text, font_size=10, font_color='rgb(250,250,250)'):
#    L=len(pos)
#    if len(text)!=L:
#        raise ValueError('The lists pos and text must have the same len')
#    annotations = go.Annotations()
#    for k in range(L):
#        annotations.append(
#            go.Annotation(
#                text=labels[k], # or replace labels with a different list for the text within the circle  
#                x=pos[k][0], y=2*M-position[k][1],
#                xref='x1', yref='y1',
#                font=dict(color=font_color, size=font_size),
#                showarrow=False)
#        )
#    return annotations  
#
#axis = dict(showline=False, # hide axis line, grid, ticklabels and  title
#            zeroline=False,
#            showgrid=False,
#            showticklabels=False,
#            )
#
#layout = dict(title= 'Tree with Reingold-Tilford Layout',  
#              annotations=make_annotations(position,list( v_label)),
#              font=dict(size=12),
#              showlegend=False,
#              xaxis=go.XAxis(axis),
#              yaxis=go.YAxis(axis),          
#              margin=dict(l=40, r=40, b=85, t=100),
#              hovermode='closest',
#              plot_bgcolor='rgb(248,248,248)'          
#              )
#
#data=go.Data([lines, dots])
#fig=dict(data=data, layout=layout)
#fig['layout'].update(annotations=make_annotations(position, v_label))
#py.iplot(fig, filename='Tree-Reingold-Tilf')
#
#

community = g.community_multilevel()
color_list = ['red', 'blue','green',  'cyan',   'pink',   'orange',   'grey',
  'yellow',   'white',  'black',  'purple' ]
plot(g, "graph.png", layout=layout,
     vertex_color=[color_list[x] for x in community.membership])