samtools的一些问题

samtools在内存与core大量使用时容易出错：如

samtools sort: failed to create temporary file "TCGA-B0-5117-01A-01R-1420-07/hisat2_result/tmp.0000.bam": Cannot send after transport endpoint shutdown

33662 Aborted (core dumped) | samtools sort -@12 - $1/hisat2_result/$1.sort

[bam_merge_core] fail to open file TCGA-A3-3313-01A-02R-1325-07/hisat2_result/TCGA-A3-3313-01A-02R-1325-07.sort.0026.bam

这并不是命令出错

转载于:https://www.cnblogs.com/zhengzh/p/8343382.html