命名实体数据集实体标注方法

命名实体的标注有两种方式：1）BIOES　　2)BIO

　　实体的类别可以自己根据需求改变，通常作为原始数据来说，标注为BIO的方式。自己写了一套标注方法，大家可以参考下

原文：1.txt

　　

Inspired by energy-fueled phenomena such as cortical cytoskeleton flows [46,45,32] during biological morphogenesis, the theory of active polar viscous gels has been developed [37,33]. The theory models the continuum, macroscopic mechanics of a collection of uniaxial active agents, embedded in a viscous bulk medium, in which internal stresses are induced due to dissipation of energy [41,58]. The energy-consuming uniaxial polar agents constituting the gel are modeled as unit vectors. The average of unit vectors in a small local volume at each point defines the macroscopic directionality of the agents and is described by a polarization field. The polarization field is governed by an equation of motion accounting for energy consumption and for the strain rate in the fluid. The relationship between the strain rate and the stress in the fluid is provided by a constitutive equation that accounts for anisotropic, polar agents and consumption of energy. These equations, along with conservation of momentum, provide a continuum hydrodynamic description modeling active polar viscous gels as an energy consuming, anisotropic, non-Newtonian fluid [37,33,32,41]. The resulting partial differential equations governing the hydrodynamics of active polar viscous gels are, however, in general analytically intractable.

 

人工标注文本：1.ann

　

T1 Task 120 155 theory of active polar viscous gels
T2 Process 195 238 models the continuum, macroscopic mechanics
T3 Material 137 155 polar viscous gels
T4 Material 258 280 uniaxial active agents
T6 Material 296 315 viscous bulk medium
T7 Material 415 436 uniaxial polar agents
T8 Material 454 457 gel
* Synonym-of T7 T8
T9 Material 1074 1092 polar viscous gels
T10 Material 1099 1149 energy consuming, anisotropic, non-Newtonian fluid
* Synonym-of T9 T10
T11 Material 1241 1266 active polar viscous gels
T12 Process 628 646 polarization field
T13 Process 652 670 polarization field
T14 Process 689 707 equation of motion
R1 Hyponym-of Arg1:T13 Arg2:T14
T15 Process 866 887 constitutive equation
T16 Process 1023 1057 continuum hydrodynamic description
T17 Process 959 1011 These equations, along with conservation of momentum
* Synonym-of T17 T16
T18 Process 44 71 cortical cytoskeleton flows
T19 Process 90 114 biological morphogenesis
T20 Material 773 778 fluid

 

现在批量对数据集进行标注，代码参考如下：

  1 import spacy
  2 
  3 
  4 def extract_entity():
  5 
  6     with open('./data/1.txt', 'r', encoding='utf8') as tfr, open('./data/1.ann', 'r', encoding='utf8'