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1

Biosignal Tools

BioSig is a software library for processing of biomedical signals (EEG, ECG, etc.) with Matlab, Octave, C/C++ and Python. About 50 different data formats are supported.

2

SOFA

Spatially Oriented Format for Acoustics

This project provides a Matlab/Octave API for the Spatially Oriented Format for Acoustics (SOFA). More information on SOFA can be found at

The file format is intended for reading, saving, and describing spatially oriented data of acoustic systems. Examples of data are head-related transfer functions (HRTFs), binaural room impulse responses (BRIRs), spatial room impulse responses (SRIR), multichannel measurements such as done with microphone arrays...

3

asammdf

Fast Python reader and editor for ASAM MDF / MF4 (Measurement Format)

*asammdf* is a fast Python parser and editor for ASAM (Associtation for Standardisation of Automation and Measuring Systems) MDF / MF4 (Measurement Data Format) files.

It supports MDF versions 2 (.dat), 3 (.mdf) and 4 (.mf4).

*asammdf* works on Python 2.7, and Python >= 3.4

4

octave-cfitsio

GNU octave bindings to the cfitsio library

GNU Octave bindings to the cfitsio library in an attempt to make a close to MATLAB toolkit for Octave.

5

OpenDAFF

Directional Audio File Format

OpenDAFF is a free, open-source software package for directional audio data - like the directivity of microphones, speakers, as well as head-related transfer functions (HRTFs)

6

ebfformat

An Efficient Binary data Format

EBF, which stands for Efficient Binary Format, is a binary file format for reading and writing binary data easily. Reading writing routines are currently available in C,C++,Fortran,Java, Python, IDL, MATLAB. A program called ebftkpy which has a set of utility functions to work with the .ebf files , e.g., viewing the contents and getting a summary, is also provided.

The EBF specification is designed to be concise and easy to understand to make it easier for others to write their own code...

7

SDIF

The Sound Description Interchange Format (SDIF) is an established standard for the interchange of sound descriptions and analysis data. This project provides libraries, SDIF (in C) and Easdif (in C++), tools, and wrappers to read and write SDIF files.

8

Systems Biology Format Converter

The Systems Biology Format Converter (SBFC) is a Java generic framework aiming to translate any systems biology model format into another.

The SBFC Web Site providing detailed feature description and instructions for installing, using and developing new modules is: http://sbfc.sourceforge.net/ .

Currently, SBFC allows the user to convert SBML models into the formats: BioPax, Matlab, Octave, XPP, DOT, and SBGN. Due to its modular design fast development and addition of new converters...

9

Computational Rough Paths

CoRoPa stands for Computational Rough Paths. The aim of CoRoPa is to provide a software framework for various ideas related to Rough Path Theory, including rough differential equations and the digital description of serial data streams.

10

FieldTrip

The MATLAB software toolbox for MEG and EEG analysis

FieldTrip is the Matlab toolbox for EEG and MEG data. It includes algorithms for simple and advanced analysis, such as importing, preprocessing, time-frequency analysis, source reconstruction, statistical testing and connectivity analysis.

11

openGPS

Open Source Implementations for 3D-Surface Characterisation Algorithms according to ISO 25178 (Geometric Product Specification) in verifiable pseudocode (MATLAB). Implementation of an XML-based file exchange format according to upcoming ISO 25178-72.

12

Anie

PID_control, real_time, matlab_simulink, xilinx_ise, fpga_spartan3e

Embedded system design (VHDL description) based on Xilinx's Spartan3E Development Kit to perform real-time PID control and monitoring of time critical plants such as brushless DC motors, maglevs...

vimeo.com/channels/anie

prezi.com/gpbycavq499c/anie/

13

TracesPlay

Fast and multi platform reader of network traces, have possible to shared date in screen, file or Matlab

14

protein-ms

Tools for mass spectrometry, especially for protein mass spectrometry and proteomics: Quantification tools, converters for Applied Biosystems (Q Star and Q Trap), calculation of in-silico fragmentation spectra, converter for Mascot result files

15

JMatIO - Matlab's MAT-file I/O in JAVA

Matlab's MAT-file I/O API in JAVA. Supports Matlab 5 MAT-flie format reading and writing. Written in pure JAVA.

16

MLPlot

MLPlot is a lightweight plotting library written in Java. It produces vector graphics in the SVG format but can also save EPS, JPG, PNG,..(if convert and inkscape are installed). The goal is to imitate MATLAB's 2D plotting functionality.

17

SPIDR Matlab/Octave Client

Provides an API, which enables the Matlab or Octave user (and developer) to incorporate Space Weather data and metadata resources from the Space Physics Interactive Data Resource (SPIDR) directly into an Matlab/Octave application. Examples included.

18

PrIMe Data Management

primeHandle is a set of data management tools in support of the PrIMe Initiative (http://primekinetics.org). primeHandle includes graphical user interfaces for searching through data collections, editing and submitting data to the PrIMe Data Depository.

19

Looktxt - a numerical block reader

Search and export numerics from any text/ascii file. Data sets (scalar, vector, matrix) are given unique names, based on file content. Results can be generated for Matlab, IDL, Scilab, Octave, XML, HTML A wrapper exists for direct usage from Matlab.

20

Axon Library

Axon Library (libaxon) is an Open Source, cross-platform, C++ library for reading files in Axon Binary Format. Currently only ABF2 is supported. Additionally, project include binders for Python and Matlab.