matlab中seqshift函数,MATLAB生物信息分析工具箱（一）

这里给出 MATLAB_R2017a 的生物信息学工具箱中 自带的样例 一览：

如果是默认安装，则相关目录在： C:\Program Files\MATLAB\R2017a\examples\bioinfo

按字母排序如下： AlignMultipleSequencesExample.m

AlignQuerySequenceToProfileUsingHMMModelAlignmentExample.m

AUCNormalizationExample.m

BuildPhylogeneticTreefromPairwiseDistancesExample.m

BuildPhylogeneticTreeusingNeighborJoiningMethodExample.m

CalculateAffymetrixProbeAffinitiesExample.m

CalculateMaximumFlowExample.m

CalculateRangeOfGeneExpressionProfilesExample.m

CalculateSequenceProfilefromPartofAlignmentCountingAllGaExa

CalculateTheAtomicCompositionOfAProteinExample.m

CalculateVarianceOfGeneExpressionProfilesExample.m

ChangeReferenceSequenceOfBioMapObjectExample.m

CharacterizeGenesInvolvedInTheYeastDiauxicShiftExample.m

CleaveASequenceExample.m

ComputeTheNumberOfReadsMappedToRefSeqExample.m

ConstructABioIndexedFileObjectAndAccessItsGOExample.m

ConstructABioMapObjectExample.m

ConstructAnExptDataObjectExample.m

ConstructBioReadObjectfromFASTQFileExample.m

ConstructBioReadObjectfromMATLABStructureExample.m

ConstructBioReadObjectfromMATLABWorkspaceVariablesExample.m

ConvertADNASequenceToAnRNASequenceExample.m

ConvertAlignedSequencesToCIGARStringsExample.m

ConvertAnAminoAcideSequenceToANucleotideSequenceExample.m

ConvertAnAminoAcidSequenceToSingleletterOrThreeletterExampl

ConvertANucleotideSequenceToItsComplementarySequenceExample

ConvertARandomAminoAcidSequenceExample.m

CountAminoAcidsInASequenceExample.m

CountCodonsInANucleotideSequenceExample.m

CountCodonsInNucleotideSeqExample.m

CountDimersInANucleotideSequenceExample.m

CountNucleotidesInASequenceExample.m

CountTheNumberOfReadsMappedToGenomicFeaturesExample.m

CreateABiographObjectAndCalculateNodePositionExample.m

CreateABiographObjectExample.m

CreateABioMapObjectDisplayInNGSBrowserExample.m

CreateAPhylogeneticTreeExample.m

CreateBiographObjSpecifyAccessItsPropsExample.m

CreatePCAPlotOfMicroarrayDataExample.m

CreateQualityControlPlotsForSequenceAndQualityDataExample.m

DetermineImportantFeaturesFromFisherIrisDataExample.m

DisplayASequenceLogoForAlignedAASeqExample.m

DisplayBoxPlotsForMicroarrayDataExample.m

DisplayCNVDataAlginedToChromosomeIdeogramExample.m

DisplaySequenceLogoForNucleotideSeqExample.m

DisplayTheFrequencyOfCNAExample.m

EstimateSynonymousAndNonsynonymousSubRatesExample.m

EstimateSynonymousAndNonsynonymousSubRatesMLExample.m

FilterNextgenerationSequencingDataExample.m

FilterOutGeneswithLowAbsoluteExpressionLevelsExample.m

GenerateAnIndexStructFromBAMFileExample.m

GenerateSpatialImageForMicroarrayDataExample.m

MaximumIntensityNormalizationExample.m

NormalizeAffymetrixDataExample.m

NormalizeMicroarrayDataExample.m

OpenAndViewABiologicalSequenceExample.m

PerformCBSOnCGHDataExample.m

PerformHierarchicalClusteringOnGeneExpressionDataExample.m

PerformUnpairedHypothesisTestForShortreadCountDataExample.m

PlotAHeatmapOfDataMatrixExample.m

PlotASetOfMassSpectraDataExample.m

PlotChromosomeIdeogramsExample.m

QuantileNormalizationExample.m

ReadCytogeneticBandingInformationFromAFileExample.m

ReadDataFromGPRFileExample.m

ReadSequenceDataFromFASTAFilesExample.m

ReadSequenceInformationFromEMBLFileExample.m

ResampleMassSpectrometryDataExample.m

RetrieveAlignmentRecordsThatAlignToTwoRefSeqExample.m

RetrieveBLOSUMScoringMatrixExample.m

RetrieveExonsFromAGTFformattedFileExample.m

RetrieveGenesFromAGTFformattedFileExample.m

RetrieveInfoAboutBAMFileExample.m

RetrieveSegmentsFromAGTFformattedFileExample.m

RetrieveTranscriptsFromAGTFformattedFileExample.m

SendRasMolScriptCommandsToMoleculeViewerAppExample.m

SmoothMassSpectrometryDataExample.m

SplitMergedPairedendSequencesIntoSeparateFilesExample.m

SplitSequencesIntoSeparateFilesBasedOnBarcodesExample.m

TrimSequencesInAFASTQFileExample.m

UpdateSAMFlagValuesOfBioMapObjectExample.m

View3DStructureOfAMoleculeExample.m

ViewAMultipleSequenceAlignmentFileExample.m

ViewAPhylogeneticTreeExample.m

将在 MATLAB生物信息分析工具箱(二) 中简要地介绍每一个文件的用途。