还是不行 错误是 $n没有在命令中用1,2,3来代替,而仍然是$n,错误如下
***@ubuntu:~/Desktop/tagSNP_new/test$ ./run test.cfg
./ConvertData ../data/HCB/genotypes_chr$n_HCB.phased ../data/HCB/genotypes_chr$n_HCB Phased2 0.050 Matrix ../data/HCB/genotypes_chr$n_HCB;
Error: cannot open file ../data/HCB/genotypes_chr_legend.txt for read
Error: cannot open file ../data/HCB/genotypes_chr_sample.txt for read
Error: cannot open file ../data/HCB/genotypes_chr.phased for read
Error: cannot open file ../data/HCB/genotypes_chr_legend.txt for read
./GenTagSNPs ../data/HCB/genotypes_chr$n_HCB 0.05 100000 0.95 3 0 0 temp;
Error: cannot open file ../data/HCB/genotypes_chr.maf for read
Error: cannot open file temp;.tagSNP.txt for read
./GenTagSNPs-nomerge ../data/HCB/genotypes_chr$n_HCB 0.05 100000 0.95 3 0 0 temp;
Error: cannot open file ../data/HCB/genotypes_chr.maf for read
Error: cannot open file temp;.tagSNP.txt for read
./ho 3 ../data/HCB/genotypes_chr$n_HCB.pure temp;.map temp;.ld 0.95
Usage:
ho
Or
ho 1
sh: .map: not found
sh: .ld: not found
./MMTagger 3 ../data/HCB/genotypes_chr$n_HCB.pure temp;.map temp;.ld01 temp;.tag 0.95
Usage:
MMTagger [v1|v2]
sh: .map: not found
sh: .ld01: not found
sh: .tag: not found
Error: cannot open file temp;.tag for read