java脱机安装软件包_脱机安装软件包列表：依次获取依赖关系

我有一堆软件包的源文件及其依赖关系,我想在没有互联网访问的计算机上安装.我想在其他计算机上使用U盘安装所有这些,但某些软件包的安装失败,因为在软件包之前没有安装依赖项.在需要它们的包之前,我如何获得依次安装的顺序？

这是我目前的方法来获取包,它们的依赖关系,并按照正确的顺序来获取它们：

# find the dependencies for the packages I want

# from https://stackoverflow.com/a/15650828/1036500

getPackages

packages

tools::package_dependencies(packs,available.packages(),which=c("Depends","Imports"),recursive=TRUE)

)

packages

packages

}

# packages I want

my_packages

# get names of dependencies and try to get them in the right order,this seems ridiculous...

my_packages_and_dependencies

dependencies_only

deps_of_deps

deps_of_deps_of_deps

my_packages_and_dependencies

# where to keep the source?

local_CRAN

# get them from CRAN,source files

download.packages(pkgs = my_packages_and_dependencies,destdir = local_CRAN,type = "source")

# note that 'tools','methods','utils,'stats',etc. art not on CRAN,but are part of base

# from https://stackoverflow.com/a/10841614/1036500

library(tools)

write_PACKAGES(local_CRAN)

现在假设我在另一台电脑上安装了R和RStudio(和Rtools或Xcode),没有互联网连接,我插上USB棒,打开RProj文件来设置工作目录,并运行这个脚本：

#############################################################

## Install from source (Windows/OSX/Linux)

# What do I want to install?

my_packages_and_dependencies

# where are the source files?

local_CRAN

# scan all packages and get files names of wanted source pckgs

# I've got other things in this dir also

wanted_package_source_filenames

# put them in order to make sure deps go first,room for improvement here...

trims

x1

x2

idx

wanted_package_source_filenames

install.packages(wanted_package_source_filenames,repos = NULL,dependencies = TRUE,contrib.url = local_CRAN,# I thought this would take care of getting dependencies automatically...

type = "source" )

这工作相当不错,但仍然有一些软件包无法安装：

sapply(my_packages_and_dependencies,require,character.only = TRUE)

methods tools bitops stats

TRUE TRUE TRUE TRUE

colorspace graphics tcltk Rcpp

TRUE TRUE TRUE TRUE

digest jsonlite mime RCurl

TRUE TRUE TRUE FALSE

R6 stringr brew grid

TRUE TRUE TRUE TRUE

RColorBrewer dichromat munsell plyr

TRUE TRUE TRUE TRUE

labeling grDevices utils httr

TRUE TRUE TRUE FALSE

memoise whisker evaluate rstudioapi

TRUE TRUE TRUE TRUE

roxygen2 gtable scales proto

TRUE TRUE TRUE TRUE

MASS assertthat magrittr lazyeval

TRUE TRUE TRUE TRUE

DBI stringi yaml htmltools

TRUE TRUE TRUE TRUE

caTools formatR highr markdown

TRUE TRUE TRUE TRUE

gtools devtools ggplot2 dplyr

TRUE FALSE FALSE TRUE

tidyr rmarkdown knitr reshape2

FALSE FALSE TRUE TRUE

gdata

TRUE

Warning messages:

1: In library(package,lib.loc = lib.loc,character.only = TRUE,logical.return = TRUE,:

there is no package called ‘RCurl’

2: In library(package,:

there is no package called ‘httr’

3: In library(package,:

there is no package called ‘devtools’

4: In library(package,:

there is no package called ‘ggplot2’

5: In library(package,:

there is no package called ‘tidyr’

6: In library(package,:

there is no package called ‘rmarkdown’

似乎编织者必须在rmarkdown之前进行,在tidyr和ggplot2之前重塑2等.

必须有一个更简单和更完整的解决方案来获取源文件列表的问题,需要按照正确顺序放置所有依赖关系.最简单的方法是什么(不使用任何贡献的包)？

这是我目前正在开发的系统,我正在使用源版本的软件包来试图为离线计算机(OSX / Linux / Windows)做任何事情做准备：

> sessionInfo()

R version 3.1.2 (2014-10-31)

Platform: x86_64-w64-mingw32/x64 (64-bit)

locale:

[1] LC_COLLATE=English_United States.1252

[2] LC_CTYPE=English_United States.1252

[3] LC_MONETARY=English_United States.1252

[4] LC_NUMERIC=C

[5] LC_TIME=English_United States.1252

attached base packages:

[1] tcltk grid tools stats graphics

[6] grDevices utils datasets methods base

other attached packages:

[1] gdata_2.13.3 reshape2_1.4.1

[3] knitr_1.9 dplyr_0.4.1

[5] gtools_3.4.1 markdown_0.7.4

[7] highr_0.4 formatR_1.0

[9] caTools_1.17.1 htmltools_0.2.6

[11] yaml_2.1.13 stringi_0.4-1

[13] DBI_0.3.1 lazyeval_0.1.10

[15] magrittr_1.5 assertthat_0.1

[17] proto_0.3-10 scales_0.2.4

[19] gtable_0.1.2 roxygen2_4.1.0

[21] rstudioapi_0.2 evaluate_0.5.5

[23] whisker_0.3-2 memoise_0.2.1

[25] labeling_0.3 plyr_1.8.1

[27] munsell_0.4.2 dichromat_2.0-0

[29] RColorBrewer_1.1-2 brew_1.0-6

[31] stringr_0.6.2 R6_2.0.1

[33] mime_0.2 jsonlite_0.9.14

[35] digest_0.6.8 Rcpp_0.11.4

[37] colorspace_1.2-5 bitops_1.0-6

[39] MASS_7.3-35

loaded via a namespace (and not attached):

[1] parallel_3.1.2

编辑以下Andrie的有用的评论,我已经与miniCRAN一起去,从小插曲中缺少的是如何从本地的repo实际安装包.这是我试过的：

library("miniCRAN")

# Specify list of packages to download

pkgs

# Make list of package URLs

revolution

pkgList

pkgList

# Set location to store source files

local_CRAN

# Make repo for source

makeRepo(pkgList,path = local_CRAN,repos = revolution,type = "source")

# install...

install.packages(pkgs,repos = local_CRAN,# do I really need "file:///"?

dependencies = TRUE,type = "source" )

结果是：

Installing packages into ‘C:/emacs/R/win-library/3.1’

(as ‘lib’ is unspecified)

Warning in install.packages :

unable to access index for repository C:/Users/.../local_CRAN/src/contrib

Warning in install.packages :

packages ‘stringr’,‘devtools’,‘ggplot2’,‘dplyr’,‘tidyr’,‘rmarkdown’,‘knitr’,‘reshape2’,‘gdata’ are not available (for R version 3.1.2)

我在这里缺少什么？

编辑是的,我没有正确使用file：///,它应该是这样的：

install.packages(pkgs,repos = paste0("file:///",local_CRAN),type = "source")

这让我感到震惊,这一切基本上都是按预期的方式工作的.非常感谢.现在我只是想看看：致命错误：curl / curl.h：没有这样的文件或目录,这是阻止RCurl和httr安装.