biodist r语言_R语言 Biostrings包 stringDist()函数中文帮助文档(中英文对照)

stringDist(Biostrings)

stringDist()所属R语言包：Biostrings

String Distance/Alignment Score Matrix

字符串距离/对齐分数矩阵

译者：生物统计家园网 机器人LoveR

描述----------Description----------

Computes the Levenshtein edit distance or pairwise alignment score matrix for a set of strings.

计算Levenshtein编辑距离为一组字符串或两两对齐得分矩阵。

用法----------Usage----------

stringDist(x, method = "levenshtein", ignoreCase = FALSE, diag = FALSE, upper = FALSE, ...)

## S4 method for signature 'XStringSet'

stringDist(x, method = "levenshtein", ignoreCase = FALSE, diag = FALSE,

upper = FALSE, type = "global", quality = PhredQuality(22L),

substitutionMatrix = NULL, fuzzyMatrix = NULL, gapOpening = 0,

gapExtension = -1)

## S4 method for signature &