1 基于py2neo库导入数据到neo4j
from py2neo import Graph, Node, Relationship
import pandas as pd
import re
import os
class BuildGraph():
def __init__(self):
curdir = '/'.join(os.path.abspath(' ').split('/')[:-1])
self.data_path = os.path.join(curdir, 'data/disease.csv')
self.graph = Graph("http://localhost:7474", username="neo4j", password="neo4j") #如果是远程服务器上,将localhost:7474改成服务器ip和端口号
def read_file(self):
"""
读取文件,获得实体,实体关系
:return:
"""
# cols = ["name", "alias", "part", "age", "infection", "insurance", "department", "checklist", "symptom",
# "complication", "treatment", "drug", "period", "rate", "money"]
# 实体
diseases = [] # 疾病
aliases = [] # 别名
symptoms = [] # 症状
parts = [] # 部位
departments = [] # 科室
complications = [] # 并发症
drugs = [] # 药品
# 疾病的属性:age, infection, insurance, checklist, treatment, period, rate, money
diseases_infos = []
# 关系
disease2symptom = [] # 疾病与症状关系
disease2alias = [] # 疾病与别名关系
diseases2part = [] # 疾病与部位关系
disease2department = [] # 疾病与科室关系
disease2complication = [] # 疾病与并发症关系
disease2drug = [] # 疾病与药品关系
all_data = pd.read_csv(self.data_path, encoding='gb18030').loc[:, :].values
for data in all_data:
disease_dict = {} # 疾病信息
''' ---------------------疾病--------------------'''
disease = str(data[0]).replace("...", " ").strip()
disease_dict["name"] = disease
'''----------------------别名--------------------'''
line = re.sub("[,、;,.;]", " ", str(data[1])) if str(data[1]) else "未知"
for alias in line.strip().split():
aliases.append(alias)
disease_to_alias.append([disease, alias])
'''-------------------部位-----------------------'''
part_list = str(data[2]).strip().split() if str(data[2]) else "未知"
for part in part_list:
parts.append(part)
diseases_to_part.append([disease, part])
'''--------------------年龄------------------------'''
age = str(data[3]).strip()
disease_dict["age"] = age
'''-------------------传染性-----------------------'''
infect = str(data[4]).strip()
disease_dict["infection"] = infect
'''------------------医保--------------------------'''
insurance = str(data[5]).strip()
disease_dict["insurance"] = insurance
'''------------------科室---------------------------'''
department_list = str(data[6]).strip().split()
for department in department_list:
departments.append(department)
disease_to_department.append([disease, department])
'''-------------------检查项-----------------------'''
check = str(data[7]).strip()
disease_dict["checklist"] = check
'''-----------------症状---------------------------'''
symptom_list = str(data[8]).replace("...", " ").strip().split()[:-1]
for symptom in symptom_list:
symptoms.append(symptom)
disease_to_symptom.append([disease, symptom])
'''-----------------并发症--------------------------'''
complication_list = str(data[9]).strip().split()[:-1] if str(data[9]) else "未知"
for complication in complication_list:
complications.append(complication)
disease_to_complication.append([disease, complication])
'''-------------------治疗方法---------------------'''
treat = str(data[10]).strip()[:-4]
disease_dict["treatment"] = treat
'''---------------------药品--------------------------'''
drug_string = str(data[11]).replace("...", " ").strip()
for drug in drug_string.split()[:-1]:
drugs.append(drug)
disease_to_drug.append([disease, drug])
'''----------------治愈周期------------------------'''
period = str(data[12]).strip()
disease_dict["period"] = period
'''---------------治愈率---------------------------'''
rate = str(data[13]).strip()
disease_dict["rate"] = rate
'''-----------------费用--------------------------'''
money = str(data[14]).strip() if str(data[14]) else "未知"
disease_dict["money"] = money
diseases_infos.append(disease_dict)
return set(diseases), set(symptoms), set(aliases), set(parts), set(departments), set(complications), \
set(drugs), disease_to_alias, disease_to_symptom, diseases_to_part, disease_to_department, \
disease_to_complication, disease_to_drug, diseases_infos
def create_node(self, label, nodes):
"""
创建节点
:param label: 标签
:param nodes: 节点
:return:
"""
count = 0
for node_name in nodes:
node = Node(label, name=node_name)
self.graph.create(node)
count += 1
print(count, len(nodes))
return
def create_diseases_nodes(self, disease_info):
"""
创建疾病节点的属性
:param disease_info: list(Dict)
:return:
"""
count = 0
for disease_dict in disease_info:
node = Node("Disease", name=disease_dict['name'], age=disease_dict['age'],
infection=disease_dict['infection'], insurance=disease_dict['insurance'],
treatment=disease_dict['treatment'], checklist=disease_dict['checklist'],
period=disease_dict['period'], rate=disease_dict['rate'],
money=disease_dict['money'])
self.graph.create(node)
count += 1
print(count)
return
def create_graphNodes(self):
"""
创建知识图谱实体
:return:
"""
disease, symptom, alias, part, department, complication, drug, rel_alias, rel_symptom, rel_part, \
rel_department, rel_complication, rel_drug, rel_infos = self.read_file()
self.create_diseases_nodes(rel_infos)
self.create_node("Symptom", symptom)
self.create_node("Alias", alias)
self.create_node("Part", part)
self.create_node("Department", department)
self.create_node("Complication", complication)
self.create_node("Drug", drug)
return
def create_graphRela(self):
disease, symptom, alias, part, department, complication, drug, rel_alias, rel_symptom, rel_part, \
rel_department, rel_complication, rel_drug, rel_infos = self.read_file()
self.create_relationship("Disease", "Alias", rel_alias, "ALIAS_IS", "别名")
self.create_relationship("Disease", "Symptom", rel_symptom, "HAS_SYMPTOM", "症状")
self.create_relationship("Disease", "Part", rel_part, "PART_IS", "发病部位")
self.create_relationship("Disease", "Department", rel_department, "DEPARTMENT_IS", "所属科室")
self.create_relationship("Disease", "Complication", rel_complication, "HAS_COMPLICATION", "并发症")
self.create_relationship("Disease", "Drug", rel_drug, "HAS_DRUG", "药品")
def create_relationship(self, start_node, end_node, edges, rel_type, rel_name):
"""
创建实体关系边
:param start_node:
:param end_node:
:param edges:
:param rel_type:
:param rel_name:
:return:
"""
count = 0
# 去重处理
set_edges = []
for edge in edges:
set_edges.append('###'.join(edge))
all = len(set(set_edges))
for edge in set(set_edges):
edge = edge.split('###')
p = edge[0]
q = edge[1]
query = "match(p:%s),(q:%s) where p.name='%s'and q.name='%s' create (p)-[rel:%s{name:'%s'}]->(q)" % (
start_node, end_node, p, q, rel_type, rel_name)
try:
self.graph.run(query)
count += 1
print(rel_type, count, all)
except Exception as e:
print(e)
return
if __name__ == "__main__":
kgGraph = BuildGraph()
kgGraph .create_graphNodes()
kgGraph .create_graphRela()
在浏览器输入服务器域名和neo4j端口号,可以见到建立图数据,如下图所示