java操作txt文件

windows下文件路径的表示方法为：C:\\Documents and Settings\\wccc\\桌面\\anres_id_mapping\\xxx.txt

代码如下：

import java.io.BufferedReader;
import java.io.BufferedWriter;
import java.io.FileInputStream;
import java.io.FileNotFoundException;
import java.io.FileOutputStream;
import java.io.FileReader;
import java.io.IOException;
import java.io.InputStreamReader;
import java.io.OutputStreamWriter;
import java.util.ArrayList;
import java.util.List;

public class GeneidToEnsembl {
	public static void main(String[] args){
		String file_dir = "C:\\Documents and Settings\\wccc\\桌面\\anres_id_mapping\\";
		try {
			
			BufferedReader gene_id = new BufferedReader(new InputStreamReader(new FileInputStream(file_dir + "gene_id.txt")));
			BufferedReader geneid_ensembl_map = new BufferedReader(new InputStreamReader(new FileInputStream(file_dir + "geneid_ensembl.txt")));
			BufferedWriter geneid_ensembl_result = new BufferedWriter(new OutputStreamWriter(new FileOutputStream(file_dir + "geneid_ensembl_result.txt")));

			
			String line1 = null;
			List<String> gene_id_list = new ArrayList<String>();
			while((line1 = gene_id.readLine()) != null){
				gene_id_list.add(line1);
			}			
			String line2 = null;
			while((line2 =geneid_ensembl_map.readLine()) != null){
				if(line2.indexOf("E") > 2){
					if(gene_id_list.contains(line2.substring(0,line2.indexOf("E")-1))){
						//System.out.println(line2.substring(0,line2.indexOf("E")-1));
						geneid_ensembl_result.write(line2 + "\r\n");
					}
					
				}
				
			}
			gene_id.close();
			geneid_ensembl_map.close();
			geneid_ensembl_result.close();
			
			
		} catch (FileNotFoundException e) {
			// TODO Auto-generated catch block
			e.printStackTrace();
		} catch (IOException e) {
			// TODO Auto-generated catch block
			e.printStackTrace();
		}
		
	}

}