CSSEGISandData/COVID-19

This is the data repository for the 2019 Novel Coronavirus Visual Dashboard operated by the Johns Hopkins University Center for Systems Science and Engineering (JHU CSSE). Also, Supported by ESRI Living Atlas Team and the Johns Hopkins University Applied Physics Lab (JHU APL).

Visual Dashboard (desktop): https://www.arcgis.com/apps/opsdashboard/index.html#/bda7594740fd40299423467b48e9ecf6

Visual Dashboard (mobile): http://www.arcgis.com/apps/opsdashboard/index.html#/85320e2ea5424dfaaa75ae62e5c06e61

Please cite our Lancet Article for any use of this data in a publication: An interactive web-based dashboard to track COVID-19 in real time

Provided by Johns Hopkins University Center for Systems Science and Engineering (JHU CSSE): https://systems.jhu.edu/

DONATE to the CSSE dashboard team: https://engineering.jhu.edu/novel-coronavirus-information/support-covid-19-dashboard-team/

DATA SOURCES: This list includes a complete list of all sources ever used in the data set, since January 21, 2010. Some sources listed here (e.g., WHO, ECDC, US CDC, BNO News) are not currently relied upon as a source of data.

Aggregated data sources:

World Health Organization (WHO): https://www.who.int/
European Centre for Disease Prevention and Control (ECDC): https://www.ecdc.europa.eu/en/geographical-distribution-2019-ncov-cases
DXY.cn. Pneumonia. 2020. http://3g.dxy.cn/newh5/view/pneumonia
US CDC: https://www.cdc.gov/coronavirus/2019-ncov/index.html
BNO News: https://bnonews.com/index.php/2020/02/the-latest-coronavirus-cases/
WorldoMeters: https://www.worldometers.info/coronavirus/
1Point3Arces: https://coronavirus.1point3acres.com/en
COVID Tracking Project: https://covidtracking.com/data. (US Testing and Hospitalization Data. We use the maximum reported value from “Currently” and “Cumulative” Hospitalized for our hospitalization number reported for each state.)
Los Angeles Times: https://www.latimes.com/projects/california-coronavirus-cases-tracking-outbreak/
The Mercury News: https://www.mercurynews.com/tag/coronavirus/
US data sources at the state (Admin1) or county/city (Admin2) level:

Washington State Department of Health: https://www.doh.wa.gov/emergencies/coronavirus
Maryland Department of Health: https://coronavirus.maryland.gov/
New York State Department of Health: https://health.data.ny.gov/Health/New-York-State-Statewide-COVID-19-Testing/xdss-u53e/data
New York City Health Department: https://www1.nyc.gov/site/doh/covid/covid-19-data.page
NYC Department of Health and Mental Hygiene: https://www1.nyc.gov/site/doh/covid/covid-19-data.page and https://github.com/nychealth/coronavirus-data
Florida Department of Health Dashboard: https://services1.arcgis.com/CY1LXxl9zlJeBuRZ/arcgis/rest/services/Florida_COVID19_Cases/FeatureServer/0 and https://fdoh.maps.arcgis.com/apps/opsdashboard/index.html#/8d0de33f260d444c852a615dc7837c86
Colorado: https://covid19.colorado.gov/covid-19-data
Virginia: https://www.vdh.virginia.gov/coronavirus/
Northern Mariana Islands CNMI Department of Public Health: https://cnmichcc.maps.arcgis.com/apps/opsdashboard/index.html#/4061b674fc964efe84f7774b7979d2b5
Missouri Department of Health: https://www.arcgis.com/apps/MapSeries/index.html?appid=8e01a5d8d8bd4b4f85add006f9e14a9d
Missouri: Nodaway County: https://www.nodawaypublichealth.org/
St. Louis City Department of Health: https://www.stlouis-mo.gov/covid-19/data/#totalsByDate
St. Louis County: https://stlcorona.com/resources/covid-19-statistics1/
Massachusetts: https://www.mass.gov/info-details/covid-19-response-reporting
Michigan: https://www.michigan.gov/coronavirus/0,9753,7-406-98163_98173—,00.html
Illinois Department of Public Health: https://dph.illinois.gov/covid19
Indiana State Department of Health: https://hub.mph.in.gov/dataset?q=COVID
Connecticut Department of Public Health: https://data.ct.gov/stories/s/COVID-19-data/wa3g-tfvc/
Ohio Department of Health: https://coronavirus.ohio.gov/wps/portal/gov/covid-19/home
Oregon Office of Emergency Management: https://experience.arcgis.com/experience/fff9f83827c5461583cd014fdf4587de
Tennessee Department of Health: https://www.tn.gov/health/cedep/ncov.html
Rhode Island Department of Health: https://ri-department-of-health-covid-19-data-rihealth.hub.arcgis.com/
Wisconsin Department of Health Services: https://www.dhs.wisconsin.gov/covid-19/data.htm
North Carolina City of Greenville GIS: https://www.arcgis.com/apps/opsdashboard/index.html#/7aeac695cafa4065ba1505b1cfa72747
Iowa State Government: https://coronavirus.iowa.gov/
Minnesota Department of Health: https://www.health.state.mn.us/diseases/coronavirus/situation.html
Alabama Samford University’s Department of Geography and Sociology: https://experience.arcgis.com/experience/e03f87e48a234feebbad27d0ee7ff824
Mississippi State Department of Health: https://msdh.ms.gov/msdhsite/_static/14,0,420.html
Nebraska Department of Health and Human Services: https://experience.arcgis.com/experience/ece0db09da4d4ca68252c3967aa1e9dd
South Carolina Department of Health and Environmental Control: https://scdhec.gov/infectious-diseases/viruses/coronavirus-disease-2019-covid-19/sc-testing-data-projections-covid-19
Nevada Department of Health and Human Services: https://nvhealthresponse.nv.gov/
New Jersey Department of Health: https://covid19.nj.gov/
Delaware Emergency Management Agency: https://coronavirus.delaware.gov/
Utah Department of Health: https://coronavirus-dashboard.utah.gov/#overview
Arizona Emergency Support Function (ESF)/Recovery Support Function (RSF) Operations Dashboard: https://www.arcgis.com/apps/MapSeries/index.html?appid=62e6bfa682a34e6aae9d9255ac865467
Departamento de Salud, Puerto Rico: https://bioseguridad.maps.arcgis.com/apps/opsdashboard/index.html#/d7308c1abb4747e584329adf1215125e
Arkansas Department of Health: https://experience.arcgis.com/experience/c2ef4a4fcbe5458fbf2e48a21e4fece9
Maine Department of Health and Human Services: https://www.maine.gov/dhhs/mecdc/infectious-disease/epi/airborne/coronavirus/data.shtml
Pennsylvania Department of Health: https://www.health.pa.gov/topics/disease/coronavirus/Pages/Cases.aspx
City of Philadelphia: https://www.phila.gov/programs/coronavirus-disease-2019-covid-19/
Lancaster County: https://covid-19-lancastercountypa.hub.arcgis.com/
Chester County: https://chesco.maps.arcgis.com/apps/opsdashboard/index.html#/975082d579454c3ca7877db0a44e61ca
Louisiana Department of Health: http://ldh.la.gov/coronavirus/
Government of The District of Columbia: https://coronavirus.dc.gov/page/coronavirus-data
North Dakota Department of Health: https://www.health.nd.gov/diseases-conditions/coronavirus/north-dakota-coronavirus-cases
Oklahoma State Department of Health: https://looker-dashboards.ok.gov/embed/dashboards/44
Guam Department of Public Health and Social Services: http://dphss.guam.gov/covid-19/
New Mexico Department of Health: https://cvprovider.nmhealth.org/public-dashboard.html
Kentucky Department of Public Health: https://kygeonet.maps.arcgis.com/apps/opsdashboard/index.html#/543ac64bc40445918cf8bc34dc40e334
Georgia Department of Public Health: https://dph.georgia.gov/covid-19-daily-status-report
State of Hawai’i Department of Health: https://health.hawaii.gov/coronavirusdisease2019/what-you-should-know/current-situation-in-hawaii/
Reno County Health Department: http://reno.maps.arcgis.com/apps/opsdashboard/index.html#/dfaef27aede1414b89abf393b2ccb994
Texas Department of State Health Services: https://dshs.texas.gov/coronavirus/
Texas: City of San Antonio: https://covid19.sanantonio.gov/Home
Texas: Brazioria County: https://www.brazoriacountytx.gov/departments/health-department/brazoria-county-coronavirus-map
Texas: Brazos County Health District: http://www.brazoshealth.org
Texas: Cameron County Public Health: https://www.cameroncounty.us/publichealth/index.php/coronavirus/
Texas: Collin County: https://www.collincountytx.gov/healthcare_services/Pages/news.aspx
Texas: Dallas County: https://www.dallascounty.org/departments/dchhs/2019-novel-coronavirus.php
Texas: Denton County: https://gis-covid19-dentoncounty.hub.arcgis.com/pages/covid-19cases
Texas: Ector County: http://www.co.ector.tx.us/page/ector.CoronavirusCOVID19
Texas: City of El Paso: http://epstrong.org/results.php
Texas: Fayette County: https://www.co.fayette.tx.us/
Texas: Fort Bend County Health & Human Services: https://www.fbchealth.org/ncov/
Texas: Galveston County Health District: https://www.gchd.org/about-us/news-and-events/coronavirus-disease-2019-covid-19/galveston-county-confirmed-covid-19-cases
Texas: Harris County: https://publichealth.harriscountytx.gov/Resources/2019-Novel-Coronavirus
Texas: Hays County: https://hayscountytx.com/covid-19-information-for-hays-county-residents/
Texas: Hidalgo County Health and Human Services: https://www.hidalgocounty.us/2630/Coronavirus-Updates
Texas: Midland County: https://www.midlandtexas.gov/955/Coronavirus-COVID-19
Texas: Montgomery County: https://coronavirus-response-moco.hub.arcgis.com/
Texas: City of Corpus Christi: https://www.cctexas.com/coronavirus
Texas: Amarillo Public Health Department: https://covid-data-amarillo.hub.arcgis.com/
Texas: Tarrant County Public Health: https://www.tarrantcounty.com/en/public-health/disease-control—prevention/coronaviruas.html
Texas: City of Mount Pleasant: https://www.mpcity.net/632/COVID-19-UPDATES
Texas: City of San Angelo: https://www.cosatx.us/departments-services/health-services/coronavirus-covid-19#ad-image-0
Texas: San Angelo Standard-Times: https://www.gosanangelo.com/
Texas: Travis County: https://www.traviscountytx.gov/news/2020/1945-novel-coronavirus-covid-19-information
Texas: City of Laredo: https://www.cityoflaredo.com/coronavirus/
Texas: Williamson County & Cities Health District: http://www.wcchd.org/COVID-19/dashboard.php
California Department of Publich Health: https://www.cdph.ca.gov/covid19
California: Mariposa County: https://www.mariposacounty.org/1592/COVID-19-Information
California: Alameda County Public Health Department: https://covid-19.acgov.org/
California: City of Fresno: https://www.fresno.gov/coronavirus
California: Humboldt County: https://humboldtgov.org/
California: Madera County: https://www.maderacounty.com/government/public-health/corona-virus-covid-19/covid-revised
California: Marin County Health & Human Services: https://coronavirus.marinhhs.org/
California: Orange County Health Care Agency: https://occovid19.ochealthinfo.com/coronavirus-in-oc
California: Placer County: https://www.placer.ca.gov/coronavirus
California: Riverside County: https://www.rivcoph.org/coronavirus
California: Sacramento County: https://www.saccounty.net/COVID-19/
California: San Francisco Department of Public Helath: https://www.sfdph.org/dph/alerts/coronavirus.asp
California: San Benito County Health & Human Services: https://hhsa.cosb.us/publichealth/communicable-disease/coronavirus/
California: San Joaquin County Public Health Services: http://www.sjcphs.org/coronavirus.aspx
California: San Mateo County: https://www.smchealth.org/coronavirus
California: Santa Cruz County Health Services Agency: http://www.santacruzhealth.org/HSAHome/HSADivisions/PublicHealth/CommunicableDiseaseControl/CoronavirusHome.aspx
California: Shasta County: https://www.co.shasta.ca.us/covid-19/overview
California: Solano County: https://www.co.shasta.ca.us/covid-19/overview
California: Sonoma County: https://socoemergency.org/emergency/novel-coronavirus/coronavirus-cases/
California: Stanislaus County Health Services Agency: http://schsa.org/publichealth/pages/corona-virus/
California: Ventura County: https://www.venturacountyrecovers.org/
California: Yolo County: https://www.yolocounty.org/health-human-services/adults/communicable-disease-investigation-and-control/novel-coronavirus-2019/
California: Los Angeles County: http://publichealth.lacounty.gov/media/coronavirus/
California: San Diego County: https://www.sandiegocounty.gov/coronavirus.html
California: Santa Clara County: https://www.sccgov.org/sites/covid19/
California: Imperial County Public Health Department: http://www.icphd.org/health-information-and-resources/healthy-facts/covid-19/
California: San Bernardino County: https://sbcovid19.com/
Montana Department of Public Health and Human Services: https://dphhs.mt.gov/publichealth/cdepi/diseases/coronavirusmt
South Dakota Department of Health: https://doh.sd.gov/news/coronavirus.aspx
Wyoming Department of Health: https://health.wyo.gov/publichealth/infectious-disease-epidemiology-unit/disease/novel-coronavirus/
New Hampshire Department of Health and Human Services: https://www.nh.gov/covid19/dashboard/summary.htm
Idaho Government: https://coronavirus.idaho.gov/
Virgin Islands Department of Health: https://www.covid19usvi.com/
Non-US data sources at the country/region (Admin0) or state/province (Admin1) level:

National Health Commission of the People’s Republic of China (NHC): http://www.nhc.gov.cn/xcs/yqtb/list_gzbd.shtml
China CDC (CCDC): http://weekly.chinacdc.cn/news/TrackingtheEpidemic.htm
Hong Kong Department of Health: https://www.chp.gov.hk/en/features/102465.html
Macau Government: https://www.ssm.gov.mo/portal/
Taiwan CDC: https://sites.google.com/cdc.gov.tw/2019ncov/taiwan?authuser=0
Government of Canada: https://www.canada.ca/en/public-health/services/diseases/coronavirus.html
Australia Government Department of Health: https://www.health.gov.au/news/coronavirus-update-at-a-glance
COVID Live (Australia): https://www.covidlive.com.au/
Ministry of Health Singapore (MOH): https://www.moh.gov.sg/covid-19
Italy Ministry of Health: http://www.salute.gov.it/nuovocoronavirus
Dati COVID-19 Italia (Italy): https://github.com/pcm-dpc/COVID-19/tree/master/dati-regioni
French Government: https://dashboard.covid19.data.gouv.fr/ and https://github.com/opencovid19-fr/data/blob/master/dist/chiffres-cles.json
OpenCOVID19 France: https://github.com/opencovid19-fr
Palestine (West Bank and Gaza): https://corona.ps/details
Israel: https://govextra.gov.il/ministry-of-health/corona/corona-virus/
Ministry of Health, Republic of Kosovo: https://kosova.health/ and https://covidks.s3.amazonaws.com/data.json
Berliner Morgenpost (Germany): https://interaktiv.morgenpost.de/corona-virus-karte-infektionen-deutschland-weltweit/
rtve (Spain): https://www.rtve.es/noticias/20200514/mapa-del-coronavirus-espana/2004681.shtml
Ministry of Health, Republic of Serbia: https://covid19.rs/homepage-english/
Chile: https://www.minsal.cl/nuevo-coronavirus-2019-ncov/casos-confirmados-en-chile-covid-19/
Chile: https://www.gob.cl/coronavirus/cifrasoficiales/
Brazil Ministry of Health: https://covid.saude.gov.br/
Brazil: https://github.com/wcota/covid19br. Data described in DOI: 10.1590/SciELOPreprints.362
Gobierono De Mexico:https://covid19.sinave.gob.mx/
Japan COVID-19 Coronavirus Tracker: https://covid19japan.com/#all-prefectures
Monitoreo del COVID-19 en Perú - Policía Nacional del Perú (PNP) - Dirección de Inteligencia (DIRIN): https://www.arcgis.com/apps/opsdashboard/index.html#/f90a7a87af2548699d6e7bb72f5547c2 and Ministerio de Salud del Perú: https://covid19.minsa.gob.pe/sala_situacional.asp
Colombia National Institute of Health: http://www.ins.gov.co/Noticias/Paginas/Coronavirus.aspx
Russia: https://xn–80aesfpebagmfblc0a.xn–p1ai/information/
Ukraine: https://covid19.rnbo.gov.ua/
Public Health Agency of Sweden: https://experience.arcgis.com/experience/09f821667ce64bf7be6f9f87457ed9aa
India Ministry of Health and Family Welfare: https://www.mohfw.gov.in/
Government of Pakistan: http://covid.gov.pk/stats/pakistan
The UK Government: https://coronavirus.data.gov.uk/#category=nations&map=rate
Scottish Government: https://www.gov.scot/publications/coronavirus-covid-19-trends-in-daily-data/
Netherlands National Institute for Health and Environment: https://experience.arcgis.com/experience/ea064047519040469acb8da05c0f100d
Iceland Directorate of Health and Department of Civil Protection and Emergency Management: https://www.covid.is/data
Luxembourg Government Ministry of Health: https://msan.gouvernement.lu/en/graphiques-evolution.html
Embed our dashboard into your webpage:

Acknowledgements: We are grateful to the following organizations for supporting our Center’s COVID-19 mapping and modeling efforts: Financial Support: Johns Hopkins University, National Science Foundation (NSF), Bloomberg Philanthropies, Stavros Niarchos Foundation; Resource support: AWS, Slack, Github; Technical support: Johns Hopkins Applied Physics Lab (APL), Esri Living Atlas team

Additional Information about the Visual Dashboard: https://systems.jhu.edu/research/public-health/ncov/

Contact Us:

Email: jhusystems@gmail.com
Terms of Use:

This data set is licensed under the Creative Commons Attribution 4.0 International (CC BY 4.0) by the Johns Hopkins University on behalf of its Center for Systems Science in Engineering. Copyright Johns Hopkins University 2020.

Attribute the data as the “COVID-19 Data Repository by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University” or “JHU CSSE COVID-19 Data” for short, and the url: https://github.com/CSSEGISandData/COVID-19.

For publications that use the data, please cite the following publication: “Dong E, Du H, Gardner L. An interactive web-based dashboard to track COVID-19 in real time. Lancet Inf Dis. 20(5):533-534. doi: 10.1016/S1473-3099(20)30120-1”

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好的,我会为您提供一个使用Python实现新冠疫情预测与分析的代码示例。 首先,我们需要下载新冠疫情数据集,并进行数据预处理。在这里,我们将使用Pandas库来读取数据,进行数据清洗和转换。同时,我们将使用Scikit-Learn库来进行机器学习模型的训练和预测。最后,我们将使用Matplotlib库来可视化分析结果。 以下是代码示例: ```python import pandas as pd import numpy as np from sklearn.model_selection import train_test_split from sklearn.linear_model import LinearRegression from sklearn.metrics import mean_squared_error from sklearn.preprocessing import StandardScaler from sklearn.kernel_ridge import KernelRidge from sklearn.pipeline import make_pipeline from sklearn.gaussian_process import GaussianProcessRegressor from sklearn.gaussian_process.kernels import DotProduct, WhiteKernel import matplotlib.pyplot as plt # 读取数据 df = pd.read_csv('https://raw.githubusercontent.com/CSSEGISandData/COVID-19/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_global.csv') # 数据预处理 df = df.drop(columns=['Province/State', 'Lat', 'Long']) # 删除不需要的列 df = df.groupby('Country/Region').sum() # 按国家/地区分组 df = df.transpose() # 转置数据 df = df.fillna(0) # 填充空值为0 # 构建特征和标签 X = np.array(range(len(df)))[:, np.newaxis] y = df.values # 划分训练集和测试集 X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=0.2, random_state=0) # 数据标准化 scaler = StandardScaler() X_train = scaler.fit_transform(X_train) X_test = scaler.transform(X_test) # 训练线性回归模型 lr = LinearRegression() lr.fit(X_train, y_train) y_pred_lr = lr.predict(X_test) mse_lr = mean_squared_error(y_test, y_pred_lr) print('Linear Regression MSE:', mse_lr) # 训练贝叶斯岭回归模型 kr = KernelRidge(alpha=0.1, kernel='rbf') kr.fit(X_train, y_train) y_pred_kr = kr.predict(X_test) mse_kr = mean_squared_error(y_test, y_pred_kr) print('Kernel Ridge Regression MSE:', mse_kr) # 训练高斯过程回归模型 gp_kernel = DotProduct() + WhiteKernel() gpr = GaussianProcessRegressor(kernel=gp_kernel, alpha=0.1) gpr.fit(X_train, y_train) y_pred_gpr, y_std_gpr = gpr.predict(X_test, return_std=True) mse_gpr = mean_squared_error(y_test, y_pred_gpr) print('Gaussian Process Regression MSE:', mse_gpr) # 可视化分析结果 fig, ax = plt.subplots() ax.plot(X_test, y_test, label='True Cases') ax.plot(X_test, y_pred_lr, label='Linear Regression') ax.plot(X_test, y_pred_kr, label='Kernel Ridge Regression') ax.plot(X_test, y_pred_gpr, label='Gaussian Process Regression') ax.fill_between(X_test.squeeze(), y_pred_gpr - y_std_gpr, y_pred_gpr + y_std_gpr, alpha=0.2) ax.legend() plt.show() ``` 在这个例子中,我们使用了三种不同的机器学习模型来预测新冠感染人数:线性回归模型、贝叶斯岭回归模型和高斯过程回归模型。我们还计算了每个模型的平均方差误差(MSE)来评估预测准确度。最后,我们将预测结果可视化,以便更好地理解分析结果。 希望这个示例能够帮助您了解如何使用Python进行新冠疫情预测与分析。
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