复杂网络 初学入门资料

很多同学和同事都经常问起我怎么进入复杂网络或者网络科学这个领域?从我自己的经验来说,读优秀的综述论文是进入一个方向最便捷的途径!五年前,我曾经在科学网博客上写过一篇论文,叫做《复杂网络入门读物》,实际上是以前中英文综述的一个综述。这个文章在科学网这个小众化的社区里面都有40000+阅读,很多人认识我恐怕是因为看了这个博客。

《复杂网络入门读物》链接

http://blog.sciencenet.cn/blog-3075-549946.html

现在,复杂网络又往前走了五年,我想从五个方面为大家梳理一下最重要的参考资料——这实际上也是服务我和荣智海下半年的一门《网络科学导论》科,以及我们实验室的研究生和本科生。分别是全球重要的综述,中文快速入门的综述,英文和中文的书籍,以及领域突破性的论文。有一些要花的时间非常长,而且可能超过了我的能力,我只能尽力而为了。

什么是重要的英文综述呢?在做选择的时候,我只能秉承两个简单的原则:(1)发表在大家公认的顶尖杂志上,例如物理学的三大综述期刊(Rev. Mod. Phys., Phys. Rep. Adv. Phys.),以及NatureNaturePhysicsScienceNature Reviews系列上的综述论文;(2)发表后引用超过1000次的论文(本文的引用数据来自Google Scholar,截止到解放军建军90周年)。有些综述论文我个人特别喜欢,例如最近在J. Complex Networks和我过Nat. Sci. Rev.上的一些工作。但是为了避免带入太多个人色彩,我都没有选入。如果这些论文足够好,我相信很快就会引用超过1000次。

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(1)           综合性综述(往往包含结构特征、演化建模和动力学)

[Albert2002] Albert, R., &Barabási, A. L. (2002). Statistical mechanics of complex networks. Reviewsof Modern Physics, 74(1), 47. [Cited 18689 times]

[Dorogovtsev2002] Dorogovtsev, S.N., & Mendes, J. F. (2002). Evolution of networks. Advances in Physics, 51(4),1079-1187. [Cited 3234 times]

[Newman2003] Newman, M. E. J.(2003). The structure and function of complex networks. SIAMReview, 45(2), 167-256. [Cited 16020 times]

[Boccaletti2006] Boccaletti, S.,Latora, V., Moreno, Y., Chavez, M., & Hwang, D. U. (2006). Complexnetworks: Structure and dynamics. Physics Reports, 424(4), 175-308.[Cited 7457times]

[Dorogovtsev2008] Dorogovtsev, S.N., Goltsev, A. V., & Mendes, J. F. (2008). Critical phenomena in complexnetworks. Reviews of Modern Physics, 80(4), 1275. [Cited 1426 times]

(2)           网络结构特征

[Strogatz2001] Strogatz, S. H.(2001). Exploring complex networks. Nature, 410(6825), 268. [Cited 7038 times]

[Wang2003] Wang, X. F., & Chen,G. (2003). Complex networks: small-world, scale-free and beyond. IEEECircuits and Systems Magazine, 3(1), 6-20. [Cited 1213 times]

[Alon2007] Alon, U. (2007). Network motifs:theory and experimental approaches. Nature Reviews Genetics, 8(6),450-461. [Cited 2117 times]

[Costa2007] Costa, L. D. F., Rodrigues, F. A.,Travieso, G., & Villas Boas, P. R. (2007). Characterization of complexnetworks: A survey of measurements. Advances in Physics, 56(1),167-242. [Cited 1664 times]

[West2008] West, B. J., Geneston,E. L., & Grigolini, P. (2008). Maximizing information exchange betweencomplex networks. Physics Reports, 468(1), 1-99. [Cited 152 times]

[Estrada2012] Estrada, E., Hatano,N., & Benzi, M. (2012). The physics of communicability in complexnetworks. Physics Reports, 514(3), 89-119. [Cited 131 times]

[Newman2012] Newman, M. E. J.(2012). Communities, modules and large-scale structure in networks. NaturePhysics, 8(1), 25. [Cited 424 times]

[Liu2016] Liu, Y. Y., &Barabási, A. L. (2016). Control principles of complex systems. Reviews ofModern Physics, 88(3), 035006. [Cited 38 times]

(3)           网络上的动力学(传播、同步、Ising模型、博弈等等)

[Nowak2006] Nowak, M. A. (2006).Five rules for the evolution of cooperation. Science, 314(5805),1560-1563. [Cited 3197 times]

[Szabo2007] Szabó, G., & Fath, G. (2007). Evolutionary games ongraphs. Physics Reports, 446(4), 97-216. [Cited 1778 times]

[Arenas2008] Arenas, A.,Díaz-Guilera, A., Kurths, J., Moreno, Y., & Zhou, C. (2008).Synchronization in complex networks. Physics Reports, 469(3), 93-153.[Cited 2036times]

[Castellano2009] Castellano, C., Fortunato, S.,& Loreto, V. (2009). Statistical physics of social dynamics. Reviewsof Modern Physics, 81(2), 591. [Cited 2378 times]

[Perc2010] Perc, M., & Szolnoki, A. (2010).Coevolutionary games—a mini review. BioSystems, 99(2),109-125. [Cited 1004 times]

[Mülken2011] Mülken, O., & Blumen, A.(2011). Continuous-time quantum walks: Models for coherent transport on complexnetworks. Physics Reports, 502(2), 37-87. [Cited 157 times]

[Goutsias2013] Goutsias, J., &Jenkinson, G. (2013). Markovian dynamics on complex reactionnetworks. Physics Reports, 529(2), 199-264. [Cited 61 times]

[Pastor2015] Pastor-Satorras, R., Castellano, C., VanMieghem, P., & Vespignani, A. (2015). Epidemic processes in complexnetworks. Reviews of Modern Physics, 87(3), 925. [Cited 484 times]

[Rodrigues2016] Rodrigues, F. A.,Peron, T. K. D., Ji, P., & Kurths, J. (2016). The Kuramoto model in complexnetworks. Physics Reports, 610, 1-98. [Cited 80 times]

[Boccaletti2016] Boccaletti, S.,Almendral, J. A., Guan, S., Leyva, I., Liu, Z., Sendiña-Nadal, I., Wang, Z.& Zou, Y. (2016). Explosive transitions in complex networks’ structure anddynamics: Percolation and synchronization. Physics Reports, 660,1-94. [Cited 9times]

(4)           具有不同组织方式的特殊网络(空间、时间、多层等等)

[Barthélemy2011] Barthélemy, M. (2011). Spatialnetworks. Physics Reports, 499(1), 1-101. [Cited 1062 times]

[Holme2012] Holme, P., & Saramäki, J. (2012).Temporal networks. Physics Reports, 519(3), 97-125. [Cited 994 times]

[Gao2012] Gao, J., Buldyrev, S. V., Stanley, H.E., & Havlin, S. (2012). Networks formed from interdependent networks. Nature Physics, 8(1), 40. [Cited 616 times]

[Malliaros2013] Malliaros, F. D.,& Vazirgiannis, M. (2013). Clustering and community detection in directednetworks: A survey. Physics Reports, 533(4), 95-142. [Cited 198 times]

[Boccaletti2014] Boccaletti, S.,Bianconi, G., Criado, R., Del Genio, C. I., Gómez-Gardenes, J., Romance, M., Sendiña-Nadal, I., Wang, Z. & Zanin, M. (2014). Thestructure and dynamics of multilayer networks. PhysicsReports, 544(1), 1-122. [Cited 826 times]

(5)           网络应用(包括在各个领域的垂直应用)

[Barabasi2004] Barabasi, A. L., & Oltvai,Z. N. (2004). Network biology: understanding the cell's functionalorganization. Nature Reviews Genetics, 5(2), 101. [Cited 6018 times]

[Borgatt2009] Borgatti, S. P., Mehra, A.,Brass, D. J., & Labianca, G. (2009). Network analysis in the socialsciences. Science, 323(5916), 892-895 [Cited 2098 times]

[Costa2011] Costa, L. D. F., Oliveira Jr, O.N., Travieso, G., Rodrigues, F. A., Villas Boas, P. R., Antiqueira, L., Viana,M. P. & Correa Rocha, L. E. (2011). Analyzing and modeling real-worldphenomena with complex networks: a survey of applications. Advances in Physics, 60(3), 329-412. [Cited 395 times]

[Lu2012] Lü, L., Medo, M., Yeung,C. H., Zhang, Y. C., Zhang, Z. K., & Zhou, T. (2012). Recommendersystems. Physics Reports, 519(1), 1-49. [Cited 512 times]

(6)           网络信息挖掘(包括结构识别、预测、排序等)

[Fortunato2010] Fortunato, S. (2010). Communitydetection in graphs. PhysicsReports, 486(3), 75-174.[Cited 5625times]

[Lu2011] Lü, L., & Zhou, T.(2011). Link prediction in complex networks: A survey. Physica A, 390(6),1150-1170. [Cited 1037 times]

[Ermann2015] Ermann, L., Frahm, K.M., & Shepelyansky, D. L. (2015). Google matrix analysis of directednetworks. Reviews of Modern Physics, 87(4), 1261. [Cited 38 times]

[Zanin2016] Zanin, M., Papo, D., Sousa, P. A.,Menasalvas, E., Nicchi, A., Kubik, E., & Boccaletti, S. (2016). Combiningcomplex networks and data mining: why and how. Physics Reports,635, 1-44. [Cited 17 times]

[Lu2016] Lü, L., Chen, D., Ren, X. L., Zhang, Q. M., Zhang, Y. C.,& Zhou, T. (2016). Vital nodes identification in complex networks.Physics Reports,650, 1-63. [Cited 48 times]

[Zhang2016] Zhang, Z. K., Liu, C., Zhan, X. X.,Lu, X., Zhang, C. X., & Zhang, Y. C. (2016). Dynamics of informationdiffusion and its applications on complex networks. Physics Reports,651, 1-34. [Cited 10 times]

[Fortunato2016] Fortunato, S., & Hric, D. (2016). Community detectionin networks: A user guide. Physics Reports, 659, 1-44. [Cited 67 times]

[Liao2017] Liao, H., Mariani, M. S., Medo, M.,Zhang, Y. C., & Zhou, M. Y. (2017). Ranking in evolving complex networks. PhysicsReports, 689, 1-54. [Cited 0 times]

[Nguyen2017] Nguyen, H. C., Zecchina, R., &Berg, J. (2017). Inverse statistical problems: from the inverse Ising problemto data science. Advances in Physics (in press).[Cited 5times]

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有些分类也不一定没有重叠区,比如说有些网络特征是通过动力学呈现的。又比如社团结构是属于网络结构特征的,但是社团挖掘作为一种特殊的数据挖掘算法,更接近网络信息挖掘。再比如Dorogovtsev2008年的那篇RMP,绝大部分都是在说动力学临界性,但是又有一些结构的内容,所以放两个类都有道理。有一些关联很强的综述,例如Clauset等人关于Power law的实证研究,因为不是从网络出发,所以没有选入。实际上各个分类之间都有公共区域,分到哪里不分到哪里,也没有不容置疑的边界。权且如此吧!希望对大家有用,谢谢关注。



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