用R语言画火山图时报错
Error in .standalone_types_check_dot_call(ffi_standalone_check_number_1.0.7, : object 'ffi_standalone_check_number_1.0.7' not found
按照2023-03-21 R语言GGPLOT2报错 ffi_standalone_check_number_1.0.7 not found - 简书 (jianshu.com)上的方法重装tidyverse后成功
原代码:
####TCGA差异分析火山图####
setwd("C:\\Users\\86189\\Desktop\\Xena")
library(tidyverse)
exp <- read.table("LIHC_fpkm_mRNA_all.txt",sep = "\t",row.names = 1,check.names = F,stringsAsFactors = F,header = T)
DEG <- as.data.frame(res)%>%
arrange(padj) %>%
dplyr::filter(abs(log2FoldChange) > 0, padj < 0.05)
logFC_cutoff <- 1
type1 = (DEG$padj < 0.05)&(DEG$log2FoldChange <