The ProjectTypeGuids used by each version of MVC are different.
MVC 1: {603c0e0b-db56-11dc-be95-000d561079b0}
MVC 2: {F85E285D-A4E0-4152-9332-AB1D724D3325}
MVC 3: {E53F8FEA-EAE0-44A6-8774-FFD645390401}
ASP.NET MVC4 Project Guid is {E3E379DF-F4C6-4180-9B81-6769533ABE47}