Anaconda windows config

Anaconda windows config

1. Installation in C: disk

1. run the setup file as adminstrator
2. add /Anaconda 3 and /Anaconda 3/Script to the system environment path, otherwise jupyter-lab cannot start

2. add tuna channels in Anaconda

guide web: https://mirrors.tuna.tsinghua.edu.cn/help/anaconda/

# 生成 .condarc （在当前用户的路径下）
conda config --set show_channel_urls yes

修改.condarc内容为

channels:
  - defaults
show_channel_urls: true
channel_alias: https://mirrors.tuna.tsinghua.edu.cn/anaconda
default_channels:
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/r
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/pro
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/msys2
custom_channels:
  conda-forge: https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud
  msys2: https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud
  bioconda: https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud
  menpo: https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud
  pytorch: https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud
  simpleitk: https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud

运行 conda clean -i 清除索引缓存，保证用的是镜像站提供的索引

3. Create R environment

# create env
conda create -n R_env python=3.7
# activate and enter the env
conda activate R_env
# install r
conda install R
# install rstudio
conda install rstudio

4. R in jupyter-lab

install.packages("IRkernel")
IRkernel::installspec(user = FALSE)