PyMesh编译过程的报错及解决办法

已于 2024-06-11 10:18:52 修改
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于 2024-06-06 18:33:12 首次发布
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本文链接：https://blog.csdn.net/dheoxnjj/article/details/139503189
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PyMesh是一个专注于几何处理的快速平台，是用C++和Python编写的。在C++中实现了计算密集型功能，在Python实现了简洁易用的接口。(本文所有命令皆在终端执行，userName为用户名)

当使用

git clone https://github.com/PyMesh/PyMesh.git
cd PyMesh
git submodule update --init
export PYMESH_PATH=`pwd`
python -m pip install --user -r $PYMESH_PATH/python/requirements.txt
python setup.py build
python setup.py install --user

或者使用

wget https://paddle-org.bj.bcebos.com/paddlescience/PyMesh.tar.gz
tar -zxvf PyMesh.tar.gz
cd PyMesh
export PYMESH_PATH=`pwd`
python -m pip install --user -r $PYMESH_PATH/python/requirements.txt
python setup.py build
python setup.py install --user

方法尝试编译PyMesh时会出现很多报错，毕竟PyMesh发布最新的一版已经是4年前了。

编译时会遇到

(1)第一个错误

Command 'python' not found, did you mean:
  command 'python3' from deb python3
  command 'python' from deb python-is-python3

  执行命令

python3 --version
which python3

 确认python版本及解释器的位置。应返回

python 3.10.12
/usr/bin/python3
  • 将关于python命令全部改用python3即可。

(2)第一个警告

/usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of
dash-separated 'description-file' will not be supported in future versions. 
Please use the underscore name 'description_file' instead
  • 将PyMesh/setup.cfg中的description-file改为description_file即可

(3)第二个错误

running build
/usr/bin/env: ‘python’: No such file or directory
Traceback (most recent call last):
  File "/home/userName/PyMesh/setup.py", line 106, in <module>
    setup(
...

 File "/usr/lib/python3.10/subprocess.py", line 369, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['third_party/build.py', 'cgal']' 
returned non-zero exit status 127.
  • 错误信息提示 /usr/bin/env: 'python' : No such file or directory，意味着环境变量python指向的路径不存在或python命令不可用。
  • 确认存在python解释器后，将PyMesh目录下的setup.py文件首行，PyMesh/scripts目录下的所有.py文件首行以及PyMesh/third_party目录下的build.py文件首行的
#!/usr/bin/env python

改为

#!/usr/bin/env python3

即可。

(4)第三个错误

#include <cstddef>
In file included from
/home/userName/PyMesh/third_party/draco/src/draco/core/hash_utils.cc:15:
/home/userName/PyMesh/third_party/draco/src/draco/core/hash_utils.h:26:1: 
error: ‘size_t’ does not name a type
   26 | size_t HashCombine(T1 a, T2 b) {
      | ^~~~~~
/home/userName/PyMesh/third_party/draco/src/draco/core/hash_utils.h:20:1: 
note: ‘size_t’ is defined in header ‘<cstddef>’; 
did you forget to ‘#include <cstddef>’?
   19 | #include <functional>
  +++ |+#include <cstddef>
...
 raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['third_party/build.py', 'draco']' 
returned non-zero exit status 1
  • 该错误信息指出在编译draco库时遇到了问题，具体是因为size_t类型未被识别。size_t是 C++ 中的一个用于表示大小的标准类型，在<cstddef>头文件中定义。
  • 在PyMesh/third_party/draco/src/draco/core/hash_utils.h头文件顶部加入#include <cstddef>  即可。

(5)第四个错误

/home/userName/PyMesh/third_party/draco/src/draco/io/parser_utils.cc:
In function ‘bool draco::parser::ParseFloat(draco::DecoderBuffer*, float*)’:
/home/userName/PyMesh/third_party/draco/src/draco/io/parser_utils.cc:113:16:
error: ‘numeric_limits’ is not a member of ‘std’
  113 |       v = std::numeric_limits<double>::infinity();
      |                ^~~~~~~~~~~~~~
/home/userName/PyMesh/third_party/draco/src/draco/io/parser_utils.cc:113:31:
error: expected primary-expression before ‘double’
  113 |       v = std::numeric_limits<double>::infinity();
      |                               ^~~~~~
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['third_party/build.py', 'draco']'
returned non-zero exit status 1.
  • 这个编译错误指出在编译draco库时遇到了问题，具体错误为 (1) error: 'numeric_limits' is not a memver of 'std'; (2) expected primary-expression before 'double'
  • 在PyMesh/third_party/draco/src/draco/io/parser_utils.cc文件顶部加入#include <limits>  即可。

(6)第五个错误

CMake Generate step failed.  Build files cannot be regenerated correctly.
Traceback (most recent call last):
  File "/home/userName/PyMesh/third_party/build.py", line 82, in <module>
    main();
...
 raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: 
Command '['cmake', '/home/userName/PyMesh/third_party/../third_party/mmg', 
'-DBUILD_SHARED_LIBS=Off', '-DCMAKE_POSITION_INDEPENDENT_CODE=On', 
'-DCMAKE_INSTALL_PREFIX=/home/userName/PyMesh/third_party/../python/pymesh/third_party/']' 
returned non-zero exit status 1.
...
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['third_party/build.py', 'mmg']' 
returned non-zero exit status 1.
  • 该错误为mmg文件的编译错误。采用以下命令将mmg代码克隆到本地。将PyMesh/third_party中的mmg目录以及所有文件删除，将克隆到本地的代码复制到上述目录内。
git clone https://github.com/MmgTools/mmg.git

重新编译会遇到第六个错误。

(7)第六个错误

/home/userName/PyMesh/tools/Triangulation/MMG/Delaunay.cpp:45:27: error: 
too few arguments to function 
‘int MMG2D_Set_meshSize(MMG5_pMesh, int32_t, int32_t, int32_t, int32_t)’
45 |    if (MMG2D_Set_meshSize(mmgMesh,num_points,0,num_segments) != 1) {
   |        ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from
/home/userName/PyMesh/python/pymesh/third_party/include/mmg/libmmg.h:38,
from /home/userName/PyMesh/tools/Triangulation/MMG/Delaunay.cpp:8:
/home/userName/PyMesh/python/pymesh/third_party/include/mmg/mmg2d/libmmg2d.h:357:24: 
note: declared here
...
/home/userName/PyMesh/tools/Triangulation/MMG/Delaunay.cpp:85:27: error: 
too few arguments to function 
‘int MMG2D_Get_meshSize(MMG5_pMesh, int32_t*, int32_t*, int32_t*, int32_t*)’
85 |    if (MMG2D_Get_meshSize(mmgMesh,
   |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~
86 |                &num_vertices, &num_triangles, &num_edges) !=1) {
   |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from 
/home/userName/PyMesh/python/pymesh/third_party/include/mmg/libmmg.h:38,
from /home/userName/PyMesh/tools/Triangulation/MMG/Delaunay.cpp:8:
/home/userName/PyMesh/python/pymesh/third_party/include/mmg/mmg2d/libmmg2d.h:911:24:
note: declared here
...
/home/userName/PyMesh/tools/Triangulation/MMG/Delaunay.cpp:156:27: error: 
too few arguments to function 
‘int MMG2D_Set_meshSize(MMG5_pMesh, int32_t, int32_t, int32_t, int32_t)’
156 |    if (MMG2D_Set_meshSize(mmgMesh,num_input_vertices,num_input_faces,0) != 1) {
    |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from 
/home/userName/PyMesh/python/pymesh/third_party/include/mmg/libmmg.h:38,
from /home/userName/PyMesh/tools/Triangulation/MMG/Delaunay.cpp:8:
/home/userName/PyMesh/python/pymesh/third_party/include/mmg/mmg2d/libmmg2d.h:357:24: 
note: declared here
  • 该错误是由于MMGD_Set_meshSize和MMG2D_Get_meshSize这两个函数被调用时参数数量不足引起的。在libmmg2d.h中，这两个函数都需要五个参数，但代码中只传入了四个。
  • 将PyMesh/tools/Triangulation/MMG目录下的Delauany.cpp的第45行
if (MMG2D_Set_meshSize(mmgMesh,num_points,0,num_segments) != 1)
#改为
if (MMG2D_Set_meshSize(mmgMesh,num_points,0,0,num_segments) != 1)
  • 85和86行
if (MMG2D_Get_meshSize(mmgMesh,
                &num_vertices, &num_triangles, &num_edges) !=1)
#改为
if (MMG2D_Get_meshSize(mmgMesh,
                &num_vertices, &num_triangles, NULL, &num_edges) !=1)
  • 156行
if (MMG2D_Set_meshSize(mmgMesh,num_input_vertices,num_input_faces,0) != 1)
#改为
if (MMG2D_Set_meshSize(mmgMesh,num_input_vertices,num_input_faces,0,0) != 1)
  • 215和216行
if (MMG2D_Get_meshSize(mmgMesh,
                &num_vertices, &num_triangles, &num_edges) !=1)
#改为
if (MMG2D_Get_meshSize(mmgMesh,
                &num_vertices, &num_triangles, NULL, &num_edges) !=1)

至此所有错误都解决完毕，应该能全部编译过去了。最后在终端输入命令

python3 setup.py install --user

最后

此时在终端输入以下命令测试是否编译成功

python3 -c "import pymesh; pymesh.test()"

可能会出现警告和错误

DeprecationWarning: 
  `numpy.distutils` is deprecated since NumPy 1.23.0, as a result
  of the deprecation of `distutils` itself. It will be removed for
  Python >= 3.12. For older Python versions it will remain present.
  It is recommended to use `setuptools < 60.0` for those Python versions.
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/home/userName/.local/lib/python3.10/site-
  packages/numpy/testing/_private/nosetester.py", line 461, in test
...
 File "/home/userName/.local/lib/python3.10/site-packages/nose/plugins/attrib.py", 
line 242, in validateAttrib
    if isinstance(value, collections.Callable):
AttributeError: module 'collections' has no attribute 'Callable'
  • 在python3中Callable已被移除，取而代之的是collections.abc.Callable。故在终端输入以下命令，将attrib.py，suite.py和case.py文件中的isinstance()函数内的的collections.Callable改为collections.abc.Callable即可
gedit /home/userName/.local/lib/python3.10/site-packages/nose/plugins/attrib.py
gedit /home/userName/.local/lib/python3.10/site-packages/nose/suite.py
gedit /home/userName/.local/lib/python3.10/site-packages/nose/case.py

至此编译全部完成，再输入测试命令会出现

Ran 175 tests in 1.419s

OK (SKIP=2)

编译PyMesh成功。

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