NCI_PID_XML | |- Created | |- Ontology? | | | +- LabelType+ (name, id) | | | +- LabelValueList | | | += LabelValue+ (name, id, parent_idref, GO?) | +- Model? | |- MoleculeList? | | | +- Molecule+ (molecule_type, id) | | | |= Name+ (name_type, long_name_type, value) | | | |- ComplexComponentList? | | | | | +- ComplexComponent* (molecule_idref) | | | | | |= Label* (label_type, value) | | | | | +- PTMExpression? | | | | | += PTMTerm+ (protein, position, aa, modification) | | | |- FamilyMemberList? | | | | | +- Member* (member_molecule_idref) | | | | | |= Label* (label_type, value) | | | | | +- PTMExpression? --> | | | += Part* (whole_molecule_idref, part_molecule_idref, start, end) | |- InteractionList? | | | +- Interaction+ (interaction_type, id) | | | |= Abstraction? (pathway_idref, pathway_name, external_pathway_id) | | | |- Source (id) | | | |- PositiveCondition* (condition_type) | | | |- NegativeCondition* (condition_type) | | | |= Label* (label_type, value) | | | |- EvidenceList? | | | | | +- Evidence+ (value) | | | |- ReferenceList? | | | | | +- Reference+ (pmid) | | | +- InteractionComponentList? | | | +- InteractionComponent* (role_type, molecule_idref) | | | |= Label* (label_type, value) | | | +- PTMExpression? --> | +- PathwayList? | +- Pathway+ (id, subnet) | |- Organism | |- LongName | |- ShortName | |- Source (id) | |- CuratorList? | | | +- Curator+ | |- ReviewerList? | | | +- Reviewer+ | |- ReferenceList? --> | +- PathwayComponentList? | += PathwayComponent+ (interaction_idref)